samd7 (samd7)


Basic Information

Item Value
gene id samd7
gene name samd7
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10219573 ~ 10234260 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234365.3
TCGCTGAGCGTGATGTCAGTGCAGCCAGGGCTTAGGCAGCGAGATAAGGCCAGCTAATGGAGATAAATTCAATCTGTATTTAAAGGTCTTTTTTAGTTAAGGCAGGTATCTGGCACCGAGGGCCAGGAGCTCCTCAGGGACGGACTGAAGGAGGCCCAAGGTGCAGTGTAAACAGGGTTTTGTGGATTTCAGTGCAGTGTGAACTCTGTGCATTCTGTTggggtttattttgtttaaagttgGTGCAGTTTGCTCTGTGAAGAAGACCAATCCCATTCTGCTCATCAGGCACAGAAGCAAAGaggTCAGTGTGTGATGACCCCACGGGAGCAGCTGAGGAAGATGACGGCTTTAGGAGATCAGGGCACTCTGGATGAGAAGCACTGGTACAGATTGGTCAACGGAATGTCAGCTGGAGagCTGAGACAGAGGCAGGAGCTGATGATGAGGAACCAGATGGCTATGGCCCCTCAGATCCTCGCTCAGGGGCAGCAAAGGCTGCAGACGGTTCCTACTCAGTTTGAGCCGCGCTTCATGGACAGAGAGCTGGTGCCCCCTGCTGAGATGGTTTCATCTGAGGCTCGGCAGATGCACATCGGCGCCCATTTGGGACCGCCTCTACCCACACACTCCAATGTCATCCCAGGTAGAGGATTCCCTGGAACAGGGGGTTATGGGTTTCTTCCCACTGAATCCATGGAGACTGTTGCTAGGCGACAAGAGCTTATCCACAAGCAGAATATCGCCAGGATGGAGATGAATGCAATCCTCCATCAGAAGGAGCTGGAGAATGCCCACCAGAAAGGTTTTATGGGAATGGAAAACCCCATGATGTACCAGGGCCTTCCACCCAACCCTATGGCCTTCAGAGGGCGCCAGCGTCTTCCCGATGGGCACGAAGTGTTCGTGCACCGCCCGACACTGGATGACCTTCAGGCAAACAGCCTGCTCATGTCCAGCAGCCCATATCCACCAATCAGCACGCTTCAGCGGGAGAGGGGTCGGAGAGCTGGCCGCAGAACTGCCAACCACAAGGGGTCAGAGGTCAACCCGGCCTGTGTAaaaagccaatcagaggagaagagTGTGGAGCAGAGTCCAGGGGGCGCTTCGGGAGAGGACAAGGAGCCAGAGATCAAAGGAGAACTGAGTGGAGAGGGCCGTGCCAGCCAGAGCAAACCCCACCAGACGAAGATAGATGTGGATCTGTCCACTAGTGCGGGCAGGAAGAGTTACAAAGATGGAGAGCAGGGTCTTCGGAAGCCATGCATTAGTGGACAGGAGGTGTGTGCTGAAGGCCCAAACTGTAACCCCAGCAGCAGCGAGAAGGACATTTCCAACCCCTGCTCGGCCTTCCAGGAGAAGTTCCTGTACCCGTCCGCAGCTGCACCGCTCTCAGGCTTCCCCTACATGTTCCCACTGCCAGGCAACGGACTCCTGCCCCCTGGACCCACGAACGTGTTTCTGAATGGTGAAGAGATGTCTTCGGTGGATGATCTTCGTAAGTGGACGGTCGATGATGTTTACAACTTCATCAATGACATTCCAAGCTGTTCTGAATATGCTCAGACATTTAAGGACCACATGATCGATGGGGAGACACTGCCACTGCTGACAGAAGATCACCTGCTAGACACACTGGGGCTAAAACTGGGTCCAGCGCTAAAGATACGATCACAGGTGTCTCGTAGACTGGGTAACATGTTTTGTATGCTGAATCTGCCGCTGGCCCCCACCCTGCAGCCCCCGACGGAGAAGGCTGTGGATCGATCCTCAGATATCAGCTCTCCATTAAACTGCCACAGTGTGGAGCTGCTGGGGAGCCCCAGAGACTCTGAGGGTCTCAAACCCTCTGAGCCTGGGGCCGAGCCTGAGAGCCAGTCACCTATTGCTATGAACGAGTCTGCCTGAGGGGGGCGCTCGAGCTGCTTCTAAGCACTGTTTTAACAGCTTGTTGTGATGGTCCACTGTAAAACCTAGTGTAAATTGCATATTCTATATGAAGTGTCCAATCTTACCTGCAAAGGACAGGTGTGGCTGCAGgtatttatcctgtacaacCATCAGCAAAACCTGATCCCACTGGTTTAATCAGTTGGTCGGTCATCAAGCAAGGAGTGGCATATGCTGCTGCTTATActctatattataatataatatatactgtaatcaATCTATTTATGATGGACAGTTTACGTTTCTTCAGGTCTGAAATCTGAACTCTATCATTCACTCCTCCAGTCGGTGAAAACAGTTTGGTTCTCTAAAACAGTAATGACTTTAACACATTTACATATCTTCTCCTATTTCAGTTTAGCCCTACCCATTCcaactacagcagtttagcaacATTCAAAGGTAAATAAGGGCACTTTAAACACTGTTCTCGTTAATACATAAACTATAGTGGGCCATCACAACAAactttattagtattttttatgttgcataaaaccctttataaggatGAATACAGTTAGGAAATTGTTCTAGTATATTAAGACATGCAATACACATCAGCAGTTGTTTCTGAAATGCCCTCAGTGATGCTTCAGTTTGTTTAGAGCACTATTACTGATTTATCTTTAACACTTACTATCCTAATACATTGAcctattttatacacatttgaTTTAGCATTGCACTTGAGCCACACAGAAAAATGTACAAAGGGAAAACAGCTTTACATATTGACTCTGACAAACACAACACAGTTACAGTCCGCTGAATTCTGCAGTAGTCAgtatttattcatattcatctcatatttttatatatctattgtaaataattgataaatagcttttatttttcacacgtgtttttattgttaagtTCTTTAATGATTTTTACAATACCTCTTAATGCGTAATTTGAATGTTgctattttatgttattttacacaagcaaaaatgaataaaaaaacaacaaaatgaatGGAGCATTATTTTGTTGCTATTTGGGATCATTTGAATCAAAGTACT
>XM_015601595.2
TCGCTGAGCGTGATGTCAGTGCAGCCAGGGCTTAGGCAGCGAGATAAGGCCAGCTAATGGAGATAAATTCAATCTGTATTTAAAGGTCTTTTTTAGTTAAGGCAGGTATCTGGCACCGAGGGCCAGGAGCTCCTCAGGGACGGACTGAAGGAGGCCCAAGGTGCAGTGTAAACAGGGTTTTGTGGATTTCAGTGCAGTGTGAACTCTGTGCATTCTGTTggggtttattttgtttaaagttgGTGCAGTTTGCTCTGTGAAGAAGACCAATCCCATTCTGCTCATCAGGCACAGAAGCAAAGaggTCAGTGTGTGATGACCCCACGGGAGCAGCTGAGGAAGATGACGGCTTTAGGAGATCAGGGCACTCTGGATGAGAAGCACTGGTACAGATTGGTCAACGGAATGTCAGCTGGAGcagagCTGAGACAGAGGCAGGAGCTGATGATGAGGAACCAGATGGCTATGGCCCCTCAGATCCTCGCTCAGGGGCAGCAAAGGCTGCAGACGGTTCCTACTCAGTTTGAGCCGCGCTTCATGGACAGAGAGCTGGTGCCCCCTGCTGAGATGGTTTCATCTGAGGCTCGGCAGATGCACATCGGCGCCCATTTGGGACCGCCTCTACCCACACACTCCAATGTCATCCCAGGTAGAGGATTCCCTGGAACAGGGGGTTATGGGTTTCTTCCCACTGAATCCATGGAGACTGTTGCTAGGCGACAAGAGCTTATCCACAAGCAGAATATCGCCAGGATGGAGATGAATGCAATCCTCCATCAGAAGGAGCTGGAGAATGCCCACCAGAAAGGTTTTATGGGAATGGAAAACCCCATGATGTACCAGGGCCTTCCACCCAACCCTATGGCCTTCAGAGGGCGCCAGCGTCTTCCCGATGGGCACGAAGTGTTCGTGCACCGCCCGACACTGGATGACCTTCAGGCAAACAGCCTGCTCATGTCCAGCAGCCCATATCCACCAATCAGCACGCTTCAGCGGGAGAGGGGTCGGAGAGCTGGCCGCAGAACTGCCAACCACAAGGGGTCAGAGGTCAACCCGGCCTGTGTAaaaagccaatcagaggagaagagTGTGGAGCAGAGTCCAGGGGGCGCTTCGGGAGAGGACAAGGAGCCAGAGATCAAAGGAGAACTGAGTGGAGAGGGCCGTGCCAGCCAGAGCAAACCCCACCAGACGAAGATAGATGTGGATCTGTCCACTAGTGCGGGCAGGAAGAGTTACAAAGATGGAGAGCAGGGTCTTCGGAAGCCATGCATTAGTGGACAGGAGGTGTGTGCTGAAGGCCCAAACTGTAACCCCAGCAGCAGCGAGAAGGACATTTCCAACCCCTGCTCGGCCTTCCAGGAGAAGTTCCTGTACCCGTCCGCAGCTGCACCGCTCTCAGGCTTCCCCTACATGTTCCCACTGCCAGGCAACGGACTCCTGCCCCCTGGACCCACGAACGTGTTTCTGAATGGTGAAGAGATGTCTTCGGTGGATGATCTTCGTAAGTGGACGGTCGATGATGTTTACAACTTCATCAATGACATTCCAAGCTGTTCTGAATATGCTCAGACATTTAAGGACCACATGATCGATGGGGAGACACTGCCACTGCTGACAGAAGATCACCTGCTAGACACACTGGGGCTAAAACTGGGTCCAGCGCTAAAGATACGATCACAGGTGTCTCGTAGACTGGGTAACATGTTTTGTATGCTGAATCTGCCGCTGGCCCCCACCCTGCAGCCCCCGACGGAGAAGGCTGTGGATCGATCCTCAGATATCAGCTCTCCATTAAACTGCCACAGTGTGGAGCTGCTGGGGAGCCCCAGAGACTCTGAGGGTCTCAAACCCTCTGAGCCTGGGGCCGAGCCTGAGAGCCAGTCACCTATTGCTATGAACGAGTCTGCCTGAGGGGGGCGCTCGAGCTGCTTCTAAGCACTGTTTTAACAGCTTGTTGTGATGGTCCACTGTAAAACCTAGTGTAAATTGCATATTCTATATGAAGTGTCCAATCTTACCTGCAAAGGACAGGTGTGGCTGCAGgtatttatcctgtacaacCATCAGCAAAACCTGATCCCACTGGTTTAATCAGTTGGTCGGTCATCAAGCAAGGAGTGGCATATGCTGCTGCTTATActctatattataatataatatatactgtaatcaATCTATTTATGATGGACAGTTTACGTTTCTTCAGGTCTGAAATCTGAACTCTATCATTCACTCCTCCAGTCGGTGAAAACAGTTTGGTTCTCTAAAACAGTAATGACTTTAACACATTTACATATCTTCTCCTATTTCAGTTTAGCCCTACCCATTCcaactacagcagtttagcaacATTCAAAGGTAAATAAGGGCACTTTAAACACTGTTCTCGTTAATACATAAACTATAGTGGGCCATCACAACAAactttattagtattttttatgttgcataaaaccctttataaggatGAATACAGTTAGGAAATTGTTCTAGTATATTAAGACATGCAATACACATCAGCAGTTGTTTCTGAAATGCCCTCAGTGATGCTTCAGTTTGTTTAGAGCACTATTACTGATTTATCTTTAACACTTACTATCCTAATACATTGAcctattttatacacatttgaTTTAGCATTGCACTTGAGCCACACAGAAAAATGTACAAAGGGAAAACAGCTTTACATATTGACTCTGACAAACACAACACAGTTACAGTCCGCTGAATTCTGCAGTAGTCAgtatttattcatattcatctcatatttttatatatctattgtaaataattgataaatagcttttatttttcacacgtgtttttattgttaagtTCTTTAATGATTTTTACAATACCTCTTAATGCGTAATTTGAATGTTgctattttatgttattttacacaagcaaaaatgaataaaaaaacaacaaaatgaatGGAGCATTATTTTGTTGCTATTTGGGATCATTTGAATCAAAGTACTA

Function

symbol description
samd7 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAMD7 (sterile alpha motif domain containing 7).

NR:

description
PREDICTED: sterile alpha motif domain-containing protein 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234365.3 False 2984 mRNA 0.47 10 10219573 10234259
XM_015601595.2 True 2988 mRNA 0.47 10 10219573 10234260

Neighbor

gene id symbol gene type direction distance location
LOC111194303 NA coding upstream 7243 10190811 ~ 10212330 (+)
LOC111194211 NA coding upstream 17819 10200824 ~ 10201754 (+)
copa copa,LOC106600386 coding upstream 31886 10172944 ~ 10187687 (+)
pex19 pex19,LOC107591335,LOC107659417,LOC107684402 coding upstream 49876 10163810 ~ 10169697 (+)
LOC103041077 slc1a8b,LOC108444332,LOC107591333,LOC107557414,LOC107706395,LOC107738183,LOC105889468 coding upstream 71846 10130895 ~ 10147727 (+)
sec62 sec62,LOC107738178,LOC102781860 coding downstream 1462 10235722 ~ 10246002 (+)
gpr160 NA coding downstream 37754 10272014 ~ 10276220 (+)
phc3 NA coding downstream 116636 10350896 ~ 10369990 (+)
LOC103040576 slc4a2,LOC108413474,LOC105025010 coding downstream 251462 10485722 ~ 10524437 (+)
LOC103039831 ubtfl,LOC108267581 coding downstream 296731 10530991 ~ 10552601 (+)
G140297 NA non-coding upstream 17734 10198052 ~ 10201839 (+)
G140274 NA non-coding upstream 63525 10098168 ~ 10156048 (+)
LOC103034722 NA non-coding upstream 89529 10125320 ~ 10130044 (+)
G140255 NA non-coding upstream 277294 9941028 ~ 9942279 (+)
G140251 NA non-coding upstream 292997 9926309 ~ 9926576 (+)
G140305 NA non-coding downstream 42617 10276877 ~ 10278511 (+)
G140331 NA non-coding downstream 73160 10307420 ~ 10307715 (+)
G140341 prkci,LOC107659412,LOC107558824 non-coding downstream 98568 10332828 ~ 10335069 (+)
G140391 NA non-coding downstream 126731 10360991 ~ 10361377 (+)
G140392 NA non-coding downstream 137192 10371452 ~ 10374169 (+)
G140262 NA other upstream 225507 9993586 ~ 9994066 (+)
G140258 NA other upstream 229277 9989918 ~ 9990296 (+)
G140103 NA other upstream 474218 9743698 ~ 9745355 (+)
G140062 NA other upstream 678763 9539775 ~ 9540810 (+)
LOC103030224 NA other upstream 995592 9220274 ~ 9223981 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other downstream 76840 10311100 ~ 10345471 (+)
G140402 NA other downstream 161260 10395520 ~ 10399976 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other downstream 193006 10427266 ~ 10444540 (+)
G140520 NA other downstream 564285 10798545 ~ 10798891 (+)
G140659 NA other downstream 1145838 11380098 ~ 11383505 (+)

Expression


Co-expression Network