G140305


Basic Information

Item Value
gene id G140305
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10276877 ~ 10278511 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU189939
ctctacgtACAACTGAGGTATCGGCTAAAAGCACGTCCATGTGTTTAAACTAGGAAATCGGTCACTCAGGGGAACTGGAGAGATGTGTCGTCTGCTTACAAAACAGTTATTATATCACAACATGAGGTAGGAGAGCGGCGTCTCGTTTATCATGCATCGCTCGCACGCTCCGGGACGTTCACCAACAGCCGTAAACAGTAAACATCCGGTCGTGTGATGAAAACACATGGTGTTTCTCAGGTCTGGAGAAACatggcaataaaaaaaagctcattATTTAGCCAATAAAAGTTGTGTTTTAcactcataataaaaaaatgttttcaatattttttataatatatatatttatatatatttatgtcttTTTAAACAACGCTACACAGTCAGCATGTCGTAGTGAGGGCTGAACTGTCATATGTTCTTTTCTCTATACAAAGCATTCAGCTGCAAAAAGGGTCTTTAGGTCTTTAATAGTCTAATCGTCTTAGTTAGGGTAATAATAACTCTAATAGTCATCATAATGTCATCAAGCCTATACATATCCACTTATTCAGCATTAGTGAACACCTCTCATACACATACAAGgaatagagagaggagagggacaCTAATAGTGTGGCCACTTTTTCTACAGCTCGGCCCTAGAGCGCCCCCCTGTGTACAAAGCAAAAAGAGAGCAATTTTACAAGTTTTCATAGTTtcagtacaaataaaaaacagttcaCTCTAGAAAGCTTgagaaatgcatttaaatacctcaacaaaaagtaaaaaaacacctttagaGTGATGGCTGCGGAGGCAACAGCAGCCAACAACACTGATTTGTTCAAAGCCTCagctctctctaacacacacacacacacacatcattacCAATCAGGTCCACAGGAAATTACGACTGCAGCTCATAATGAAAGTGAACAAATGAGCAGTTGATTTATGAGACTACCTGGACCCAGACTTTAACTGTGTGGATGAGGGAGAATCACTGCctgtctctctctctctctctctctctctctctctctctcacacacgtgcacacaccaCAAAAAATTGGCTCACTTCAGGCATCGCAACCAGCCCTTCAGGCCCCACCCACTAACATGTTCCTCCATAGTGATTGTGAGGTCAGATAACCTTTACAGAAGGCTGATAAACATCCATTTCTCCATACATCTAGAGTTCGTTAGGTATGAACTACAGTCTCATATTAGGGTGAATAATGATAACTCTAAATGTCTCTCAATATtgctatttctctttttttagctATCGTTCTATAAAGCTTGACCAACATCCCAACAGTagcaatacacaaacacatttgtGGGTGCAGCCTGAAAAGTGGGGATTACACATATACAAAACTGTATTattgtgtaaataataatagattttttaaagagCCAAGCAGCAATCACTTACAAAACGCATGCTTTCCTCGTTCTTTCGTACaaaaagtagctaaatgcaaataaacctttttttccgCCTCATAACACAGAATTCATAGTGTGTCATGGTAACAGGgcaaacatacattttaacatCAAACATGAAAAGCCCCAACAATGTCAGGAGTAAGCACTAAATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189939 True 1604 lncRNA 0.39 2 10276877 10278511

Neighbor

gene id symbol gene type direction distance location
gpr160 NA coding upstream 657 10272014 ~ 10276220 (+)
sec62 sec62,LOC107738178,LOC102781860 coding upstream 30875 10235722 ~ 10246002 (+)
samd7 samd7 coding upstream 42617 10219573 ~ 10234260 (+)
LOC111194303 NA coding upstream 64547 10190811 ~ 10212330 (+)
LOC111194211 NA coding upstream 75123 10200824 ~ 10201754 (+)
phc3 NA coding downstream 72385 10350896 ~ 10369990 (+)
LOC103040576 slc4a2,LOC108413474,LOC105025010 coding downstream 207211 10485722 ~ 10524437 (+)
LOC103039831 ubtfl,LOC108267581 coding downstream 252480 10530991 ~ 10552601 (+)
LOC103042199 LOC108437251,LOC108267580 coding downstream 279946 10558457 ~ 10680089 (+)
LOC103039003 fam49b,LOC108437217,LOC108267758,LOC107713994,LOC106592588,LOC107657432,LOC107718035,LOC107556887,LOC107701021 coding downstream 405077 10683588 ~ 10750675 (+)
G140297 NA non-coding upstream 75038 10198052 ~ 10201839 (+)
G140274 NA non-coding upstream 120829 10098168 ~ 10156048 (+)
LOC103034722 NA non-coding upstream 146833 10125320 ~ 10130044 (+)
G140255 NA non-coding upstream 334598 9941028 ~ 9942279 (+)
G140251 NA non-coding upstream 350301 9926309 ~ 9926576 (+)
G140331 NA non-coding downstream 28909 10307420 ~ 10307715 (+)
G140341 prkci,LOC107659412,LOC107558824 non-coding downstream 54317 10332828 ~ 10335069 (+)
G140391 NA non-coding downstream 82480 10360991 ~ 10361377 (+)
G140392 NA non-coding downstream 92941 10371452 ~ 10374169 (+)
G140394 NA non-coding downstream 97736 10376247 ~ 10445727 (+)
G140262 NA other upstream 282811 9993586 ~ 9994066 (+)
G140258 NA other upstream 286581 9989918 ~ 9990296 (+)
G140103 NA other upstream 531522 9743698 ~ 9745355 (+)
G140062 NA other upstream 736067 9539775 ~ 9540810 (+)
LOC103030224 NA other upstream 1052896 9220274 ~ 9223981 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other downstream 32589 10311100 ~ 10345471 (+)
G140402 NA other downstream 117009 10395520 ~ 10399976 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other downstream 148755 10427266 ~ 10444540 (+)
G140520 NA other downstream 520034 10798545 ~ 10798891 (+)
G140659 NA other downstream 1101587 11380098 ~ 11383505 (+)

Expression


Co-expression Network