LOC103035600


Basic Information

Item Value
gene id LOC103035600
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 40930528 ~ 40933121 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238385.2
TATTTATAACCTTGCTTATTTATTAATAGAGCACAAATGTGCAAATAGCAgcttaaagtgtaaaaataaattgttgtTTAAAAATGACTAACTGGAAGTAGTACTTAGTAAACAATTGCTGTTTATGTTTTAATCTCTTCAGCAGGAAAGTATGCTCACTTGATTGAAGAAGATTCCTGTCACCCACTTCTTCCTGAGCTACATCTAGTGATTATTGGAAGTCATAGTTCTGGGAAGAATGATATATGCAATGCCATTTTCAAGAAAAAGATGTTTACATTTTGGACATTGTCTGAAAAACATTATGTCAGGAGAAAACGCACTGTGTTCGGAACAAAAGTAACTATAGCCCGTGTTCCTGGCTGGTCCGGAGATTTGAATTTGGGTCTAAAGCACCGCAAGTTACGACAGGAGATTAGAGATGCAGTGAGTTCATTTAAAAAGGGGCCTCATGCAATCATTTTGGCCATGAAAGTGAACTCCACCTTTACAAAAACAACTCAAGAGACCCTGGAAAATGTCCTTACTGAAAGATTCTGGGATCACACCATCATCGTCTTCACAGGAGGACACGCACAGATGAACATTGAACATGTCATCAGTCAAATGAACTTAAAATCCCTAATTGAAACTTCCAGTATCAAGCACTGTGTACTGCAGAAACCTAACAGTTGTGAAGAGAGTAAAGAGCTGATTGAAGACATAGCACTGATGATCGCAGAAAGAGTTCCACTTCGTTTCTCGGTTGATGAAAGTGAGCAACCTGATGAATCACATGAAAAGAAGAACCTTTTGAAAagattggggaaaaaaatacaaaaactgcacagctctgataaaaaaacaagaatggagAGGACTGAGTCAATGATGGAGATAAGACGATTAGAAAACATAAGGAGGATACATGAAGATCTTGCCACAAATCCTTCTCAATCAGATCAGTCTGCATGTGAAACcatacacacagaaagaccAACAAGCACAACTGAGACAACTGTAGAAATCCATCATACAGAGGCATCAAAGCTGCTGAGTACCAAGATGACATGTGGTAATAATCCAGTTTATGACGCCTATGAACTAAATGGCTATTTTAAGTgtgACTCCCGTTTACCAGTCAGTGAGTGTGATTTTCGCAGCTGGTATGACTGTCTAGTAAAAATCTTGGAAGACTTAAGTGAGGAACAGTtcaagaaaatgaaaaacaagatGTGCAGTATGCAAAATGACAGAATTCCTACATCGCATGCAGAGGACAAAGACCGAAACACACTGGCACGTAACATGATCGAACACTGGGGTGAAGAAAAATGTATTAGCTACACCAGAGATATTCTAAAAGATATTCCACGGAATGACAaggaaattataaaaataattctgcCATTCTTACAGAGCATTGGAGAATCATGGTAATAAAAGAGATTTACCAGACTAGATTAATGAATACcaattaattctaaaaaaaaaaaaacatctacagtggtatgaaaaagtgtgATGTCGCCGCTAGAActagaactgtccctgtggtcttccatttcctcactatgttcctcacagtggaaactaaAAGCTGGAATGTCTGATATAGCTTTTTGTCTCCTTCCCcaaaaccatgatgttgaacaatctttgttttcaggtcatttgggagttgttttgaggctcccatatCGCCACTCTTTAGAGAAGATGCAACAAGGTGAAAAACTTACAATTGGGcacattaaccctttctcaCAACTGGATTCACCTGTTTATGTatgtcaagggtcaatgagcttaccaaattcattttgtgttccaataattagtgctaaaggtattcaaatcaataaaacaagggtgcccaaatttatgcacctgcataattttgtttactttatgtAAATCCTACAAACTTTATgtcacttcttaaatatcactgtatcCATCtgcaatatgatatatttaaattaaattgctgacctaaacaaccaatgatttataaaggaaaatcataaaaaaattattagagGTGCCCAaattttttataccactgtaaagCAATTTTTGCTTTTTCCAGAAAACATAAAGTTAAAGATGGCACTTTAATAATTCAAGCAATAATATTTTTGGATTTCCATCTTTTATCcttataaaataacaaaaaatgacaagAGCTGGAAGCCAGAGTTCTGTGCAGGATCCAtacacagacaaaccaagtctccctgaagctgcgggagtctcccgcatttcggcagTGGCTCCCGGATGCCCgtgagtcacatataatctcccggaattcaggacgagcgccccaaacgcgcacacaggccacagactttttttctcta
>XM_022677689.1
ttcatgtaattttcttttttctccttaaGATTCCTGTCACCCACTTCTTCCTGAGCTACATCTAGTGATTATTGGAAGTCATAGTTCTGGGAAGAATGATATATGCAATGCCATTTTCAAGAAAAAGATGTTTACATTTTGGACATTGTCTGAAAAACATTATGTCAGGAGAAAACGCACTGTGTTCGGAACAAAAGTAACTATAGCCCGTGTTCCTGGCTGGTCCGGAGATTTGAATTTGGGTCTAAAGCACCGCAAGTTACGACAGGAGATTAGAGATGCAGTGAGTTCATTTAAAAAGGGGCCTCATGCAATCATTTTGGCCATGAAAGTGAACTCCACCTTTACAAAAACAACTCAAGAGACCCTGGAAAATGTCCTTACTGAAAGATTCTGGGATCACACCATCATCGTCTTCACAGGAGGACACGCACAGATGAACATTGAACATGTCATCAGTCAAATGAACTTAAAATCCCTAATTGAAACTTCCAGTATCAAGCACTGTGTACTGCAGAAACCTAACAGTTGTGAAGAGAGTAAAGAGCTGATTGAAGACATAGCACTGATGATCGCAGAAAGAGTTCCACTTCGTTTCTCGGTTGATGAAAGTGAGCAACCTGATGAATCACATGAAAAGAAGAACCTTTTGAAAagattggggaaaaaaatacaaaaactgcacagctctgataaaaaaacaagaatggagAGGACTGAGTCAATGATGGAGATAAGACGATTAGAAAACATAAGGAGGATACATGAAGATCTTGCCACAAATCCTTCTCAATCAGATCAGTCTGCATGTGAAACcatacacacagaaagaccAACAAGCACAACTGAGACAACTGTAGAAATCCATCATACAGAGGCATCAAAGCTGCTGAGTACCAAGATGACATGTGGTAATAATCCAGTTTATGACGCCTATGAACTAAATGGCTATTTTAAGTgtgACTCCCGTTTACCAGTCAGTGAGTGTGATTTTCGCAGCTGGTATGACTGTCTAGTAAAAATCTTGGAAGACTTAAGTGAGGAACAGTtcaagaaaatgaaaaacaagatGTGCAGTATGCAAAATGACAGAATTCCTACATCGCATGCAGAGGACAAAGACCGAAACACACTGGCACGTAACATGATCGAACACTGGGGTGAAGAAAAATGTATTAGCTACACCAGAGATATTCTAAAAGATATTCCACGGAATGACAaggaaattataaaaataattctgcCATTCTTACAGAGCATTGGAGAATCATGGTAATAAAAGAGATTTACCAGACTAGATTAATGAATACcaattaattctaaaaaaaaaaaaacatctacagtggtatgaaaaagtgtgATGTCGCCGCTAGAActagaactgtccctgtggtcttccatttcctcactatgttcctcacagtggaaactaaAAGCTGGAATGTCTGATATAGCTTTTTGTCTCCTTCCCcaaaaccatgatgttgaacaatctttgttttcaggtcatttgggagttgttttgaggctcccatatCGCCACTCTTTAGAGAAGATGCAACAAGGTGAAAAACTTACAATTGGGcacattaaccctttctcaCAACTGGATTCACCTGTTTATGTatgtcaagggtcaatgagcttaccaaattcattttgtgttccaataattagtgctaaaggtattcaaatcaataaaacaagggtgcccaaatttatgcacctgcataattttgtttactttatgtAAATCCTACAAACTTTATgtcacttcttaaatatcactgtatcCATCtgcaatatgatatatttaaattaaattgctgacctaaacaaccaatgatttataaaggaaaatcataaaaaaattattagagGTGCCCAaattttttataccactgtaaagCAATTTTTGCTTTTTCCAGAAAACATAAAGTTAAAGATGGCACTTTAATAATTCAAGCAATAATATTTTTGGATTTCCATCTTTTATCcttataaaataacaaaaaatgacaagAGCTGGAAGCCAGAGTTCTGTGCAGGATCCAtacacagacaaaccaagtctccctgaagctgcgggagtctcccgcatttcggcagTGGCTCCCGGATGCCCgtgagtcacatataatctcccggaattcaggacgagcgccccaaacgcgcacacaggccacagactttttttctcta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238385.2 True 2345 mRNA 0.38 3 40930528 40933121
XM_022677689.1 False 2202 mRNA 0.38 2 40930809 40933121

Neighbor

gene id symbol gene type direction distance location
LOC103042443 NA coding upstream 7116 40914639 ~ 40923412 (+)
LOC111194221 NA coding upstream 37997 40888111 ~ 40892531 (+)
LOC107197097 NA coding upstream 47625 40873704 ~ 40882903 (+)
LOC111194402 NA coding upstream 65892 40857875 ~ 40864636 (+)
tex261 tex261,LOC106577837,LOC107755640 coding upstream 148098 40772580 ~ 40782430 (+)
LOC103042229 NA coding downstream 22883 40956004 ~ 40968346 (+)
LOC103042538 NA coding downstream 36720 40969841 ~ 40980787 (+)
LOC103036419 NA coding downstream 71573 41004694 ~ 41007443 (+)
G148103 NA non-coding upstream 20259 40908904 ~ 40910269 (+)
LOC111194222 NA non-coding upstream 22375 40906575 ~ 40908153 (+)
G148086 LOC108411458 non-coding upstream 97379 40832387 ~ 40833149 (+)
G148084 NA non-coding upstream 103954 40824120 ~ 40826574 (+)
G148037 NA non-coding upstream 289658 40632244 ~ 40640870 (+)
G148105 NA non-coding downstream 1168 40934289 ~ 40938202 (+)
LOC111194224 NA non-coding downstream 90307 41023428 ~ 41025021 (+)
LOC107197094 NA other upstream 27923 40894544 ~ 40902605 (+)
LOC103041218 LOC108411459,LOC108267979 other upstream 60015 40836324 ~ 40870513 (+)
G148036 NA other upstream 143390 40761398 ~ 40787138 (+)
c16h20orf27 cunh20orf27,c7h20orf27,si:ch211-74f19.2,LOC107755635,LOC107697474 other upstream 235750 40667240 ~ 40694778 (+)
G147592 NA other upstream 1779328 39147599 ~ 39151200 (+)
LOC103036120 NA other downstream 63957 40997078 ~ 41000503 (+)
LOC103036716 LOC103036716 other downstream 77758 41010879 ~ 41015927 (+)

Expression


Co-expression Network