LOC111194221


Basic Information

Item Value
gene id LOC111194221
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 40888111 ~ 40892531 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677687.1
aatctctgtctACTTGCCAGATGGTTGTTCAGCTCATGAATGGGTgtgtaacaaaataataaataaatgggaTCTAAAATATCCAGATCTGCTGATGGCCACCATCCCTCATATACAGATGATGaaaGCATACCTCTTTTTGATAAGCTCAAACTTGTGCTTATTGGCTGTCATAAAGCTGGGAAAAATAGAATTGGAAATGCCATTCTCGGGAAGAAAGCCTTCACACACAAGAATTTTCTAACAAAAGAATACTtgaagtgcaaaaaaacaatttttggaAGACGCATTTCTGTGATTCGTGTTCCTGGTTGGTCTGGAGATTTGAGCTCTGAAGATAACACGCAAGAAAATGTTCGGCAGGTGATAAAGGACAGCGTGTGGTCCTTCAAACATGGACCTAATGCCATCATACTGGTGGTGAAAAAGCACACTGAACTTTCAGAGACTACAATAAGAACATTACAAACACTTTTGGGAGACAGTGTTTCTACACATATTTTAGTTGCTTCCACAGATGGAAAAAGGATTTCACTTGCTACCATAAGTGAACACTAttgcaacaaacaaacaattattaaaacatacagaaacagGAATCGCTTCTTTTGGAGAAGAACATGTAGAAAGCAGCACATGAAGTTAATAGAAACAATTGAAGATTTTATGGTGAGAAAAAATGCCATTCATTTCTGTCCTACAGGAAAAGAGGAAGCGAAACCTGTACTGCAGCTTATGCAATTGAAAATAGTGGTGAATAGACTGATTCAGAGGATATCAGGCCTTTCTGGGTCCATCTCAAAATTGCACTCAGGCAAGAAGACAGAGACAAAtaagctgcaaaaaaacaaagaattaaaaaatgaagaaataagaAAACTACAAGATGCATTGAAACAAAAAGAGGAAGCACTAAAAGTAATGAAAGAGAAATGGTTACAGCCAAATCAAAGTGCAGAAAGGTTCTCTGCCCAGCATGGAAGAATAACACAGGTTGAGGATGATGGAACAAGAGAAGATCTTCAGAGAAACATAACAAAAGATCAAAgaattgagcaaaaaaaagtagccaaaaaaagtcagaatggaaaaaaaattaagtacacATTGAAAAGAAAACCAAGAAAGCAAGCACAAAGAAAGCCTTGGagaaagacaagaaaaagagaTGCACTGGAATTGGTCCCACTGCATTCAGCAGAAGCAACACCAATTGATGAAGAACCTCAGGCAGGTGAAGGTGTTGAGTTCGTGGACAGGTTCCGTGCAGACCTCATTGAAAGAGTTGTGTCAGTGGAACCTATTCTCGATGAAATGTTACAGTTAATTGGCGTTGATAAGTATTCAAAAGTCAGACAAGCTAAAACAAGCcaggaaaaaatgagagaactCTACATCATCTTAGATGGAGGTGggcagaagctgaaagaggAATTCTACAGGAGTCTGCTGAAACACGAGGAGTTCCTAGTTGAAGACCTTCACCGTGTTTCTTAAACCCCTTTCAACCTAGGGTATGCCTACATTGTTTTGTTCACAACTCTCTCTTTTGCAAACTTGAGTTCAATTATGTTTAAACATTATTCATTATAGTAAaggaaaacatatatattatatcatggCTATAATATTAACTGTACATGTAAATAACAATGCAGGATATTAcataaaatagaacaaaaacagaaagcGAACAAAAGAGATTTGAATCATTTTTCAAGTACAACATGGTTACATCCTACTAAAGGACTATGCCGTATGCTCAAGAGGTGGGAACCTTCAAAGTACTTAATTTTCGTAGTGAAACCTTTATTGTGTGAAACACAGACAGAGCTAAGGTTTGATATTGTAATCTATGTTCAGAATTTTGTAAACTTGTGCCTGACCCTTCTGctctatcatttttttttaaatgcgttCTTCACCCTAAACCTTTATCTAGCCAAGCATACTGTACAAGTTTTACAAAAGTATTGGGTttgaacagtaaacagtaaaaaatgttaAGGCTGTGTCCAAAACTGTGCCATTTCACTATTTCCTACAAGTGAATTTTCTGATCAATATATAGAGCAATATGTTGGACAAGTTTGGCTAAATTTCAATAGAATGGAAAAGAATCAGACCACAGAGTCTATATTTCATATCGTCATTGTGCTGGgcttattctgttatttttttgtttgcttgagtcttattttacattatatactgtatcatattttatacattatttacagaCTGTACACTGATCAATACATAAAAAGATTTATATCTTATGTTGGTCTATTTTTCTTGTCTGAACCCATGAGCTCCACATACTTCCAGGTTTCAAGAGTAACATGTGTATGACATTTACATGATAAGGagataatgtattttacattttatatttacatatagtT
>XM_022677688.1
aatctctgtctACTTGCCAGATGGTTGTTCAGCTCATGAATGGGTgtgtaacaaaataataaataaatgggaTCTAAAATATCCAGATCTGCTGATGGCCACCATCCCTCATATACAGATGATGaaaGCATACCTCTTTTTGATAAGCTCAAACTTGTGCTTATTGGCTGTCATAAAGCTGGGAAAAATAGAATTGGAAATGCCATTCTCGGGAAGAAAGCCTTCACACACAAGAATTTTCTAACAAAAGAATACTtgaagtgcaaaaaaacaatttttggaAGACGCATTTCTGTGATTCGTGTTCCTGGTTGGTCTGGAGATTTGAGCTCTGAAGATAACACGCAAGAAAATGTTCGGCAGGTGATAAAGGACAGCGTGTGGTCCTTCAAACATGGACCTAATGCCATCATACTGGTGGTGAAAAAGCACACTGAACTTTCAGAGACTACAATAAGAACATTACAAACACTTTTGGGAGACAGTGTTTCTACACATATTTTAGTTGCTTCCACAGATGGAAAAAGGATTTCACTTGCTACCATAAGTGAACACTAttgcaacaaacaaacaattattaaaacatacagaaacagGAATCGCTTCTTTTGGAGAAGAACATGTAGAAAGCAGCACATGAAGTTAATAGAAACAATTGAAGATTTTATGGTGAGAAAAAATGCCATTCATTTCTGTCCTACAGGAAAAGAGGAAGCGAAACCTGTACTGCAGCTTATGCAATTGAAAATAGTGGTGAATAGACTGATTCAGAGGATATCAGGCCTTTCTGGGTCCATCTCAAAATTGCACTCAGGCAAGAAGACAGAGACAAAtaagctgcaaaaaaacaaagaattaaaaaatgaagaaataagaAAACTACAAGATGCATTGAAACAAAAAGAGGAAGCACTAAAAGTAATGAAAGAGAAATGGTTACAGCCAAATCAAAGTGCAGAAAGGTTCTCTGCCCAGCATGGAAGAATAACACAGGTTGAGGATGATGGAACAAGAGAAGATCTTCAGAGAAACATAACAAAAGATCAAAgaattgagcaaaaaaaagtagccaaaaaaagtcagaatggaaaaaaaattaagtacacATTGAAAAGAAAACCAAGAAAGCAAGCACAAAGAAAGCCTTGGagaaagacaagaaaaagagaTGCACTGGAATTGGTCCCACTGCATTCAGCAGCAACACCAATTGATGAAGAACCTCAGGCAGGTGAAGGTGTTGAGTTCGTGGACAGGTTCCGTGCAGACCTCATTGAAAGAGTTGTGTCAGTGGAACCTATTCTCGATGAAATGTTACAGTTAATTGGCGTTGATAAGTATTCAAAAGTCAGACAAGCTAAAACAAGCcaggaaaaaatgagagaactCTACATCATCTTAGATGGAGGTGggcagaagctgaaagaggAATTCTACAGGAGTCTGCTGAAACACGAGGAGTTCCTAGTTGAAGACCTTCACCGTGTTTCTTAAACCCCTTTCAACCTAGGGTATGCCTACATTGTTTTGTTCACAACTCTCTCTTTTGCAAACTTGAGTTCAATTATGTTTAAACATTATTCATTATAGTAAaggaaaacatatatattatatcatggCTATAATATTAACTGTACATGTAAATAACAATGCAGGATATTAcataaaatagaacaaaaacagaaagcGAACAAAAGAGATTTGAATCATTTTTCAAGTACAACATGGTTACATCCTACTAAAGGACTATGCCGTATGCTCAAGAGGTGGGAACCTTCAAAGTACTTAATTTTCGTAGTGAAACCTTTATTGTGTGAAACACAGACAGAGCTAAGGTTTGATATTGTAATCTATGTTCAGAATTTTGTAAACTTGTGCCTGACCCTTCTGctctatcatttttttttaaatgcgttCTTCACCCTAAACCTTTATCTAGCCAAGCATACTGTACAAGTTTTACAAAAGTATTGGGTttgaacagtaaacagtaaaaaatgttaAGGCTGTGTCCAAAACTGTGCCATTTCACTATTTCCTACAAGTGAATTTTCTGATCAATATATAGAGCAATATGTTGGACAAGTTTGGCTAAATTTCAATAGAATGGAAAAGAATCAGACCACAGAGTCTATATTTCATATCGTCATTGTGCTGGgcttattctgttatttttttgtttgcttgagtcttattttacattatatactgtatcatattttatacattatttacagaCTGTACACTGATCAATACATAAAAAGATTTATATCTTATGTTGGTCTATTTTTCTTGTCTGAACCCATGAGCTCCACATACTTCCAGGTTTCAAGAGTAACATGTGTATGACATTTACATGATAAGGagataatgtattttacattttatatttacatatagtT

Function

GO: NA

KEGG:

id description
ko02010 ABC transporters
ko04142 Lysosome
ko04976 Bile secretion

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677687.1 True 2405 mRNA 0.35 5 40888111 40892531
XM_022677688.1 False 2402 mRNA 0.35 5 40888111 40892531

Neighbor

gene id symbol gene type direction distance location
LOC107197097 NA coding upstream 5208 40873704 ~ 40882903 (+)
LOC111194402 NA coding upstream 23475 40857875 ~ 40864636 (+)
tex261 tex261,LOC106577837,LOC107755640 coding upstream 105681 40772580 ~ 40782430 (+)
LOC103040175 LOC108411462 coding upstream 117952 40755687 ~ 40770159 (+)
vax2 vax2,LOC107755639,LOC107572133,LOC107750765 coding upstream 158883 40701526 ~ 40729228 (+)
LOC103042443 NA coding downstream 22108 40914639 ~ 40923412 (+)
LOC103035600 NA coding downstream 37997 40930528 ~ 40933121 (+)
LOC103042229 NA coding downstream 63473 40956004 ~ 40968346 (+)
LOC103042538 NA coding downstream 77310 40969841 ~ 40980787 (+)
LOC103036419 NA coding downstream 112163 41004694 ~ 41007443 (+)
G148086 LOC108411458 non-coding upstream 54962 40832387 ~ 40833149 (+)
G148084 NA non-coding upstream 61537 40824120 ~ 40826574 (+)
G148037 NA non-coding upstream 247241 40632244 ~ 40640870 (+)
G148038 NA non-coding upstream 254660 40630558 ~ 40633451 (+)
G147984 NA non-coding upstream 351469 40534279 ~ 40536642 (+)
LOC111194222 NA non-coding downstream 14044 40906575 ~ 40908153 (+)
G148103 NA non-coding downstream 16373 40908904 ~ 40910269 (+)
G148105 NA non-coding downstream 41758 40934289 ~ 40938202 (+)
LOC111194224 NA non-coding downstream 130897 41023428 ~ 41025021 (+)
LOC103041218 LOC108411459,LOC108267979 other upstream 17598 40836324 ~ 40870513 (+)
G148036 NA other upstream 100973 40761398 ~ 40787138 (+)
c16h20orf27 cunh20orf27,c7h20orf27,si:ch211-74f19.2,LOC107755635,LOC107697474 other upstream 193333 40667240 ~ 40694778 (+)
G147592 NA other upstream 1736911 39147599 ~ 39151200 (+)
G147496 NA other upstream 2272756 38614878 ~ 38615355 (+)
LOC107197094 NA other downstream 2013 40894544 ~ 40902605 (+)
LOC103036120 NA other downstream 104547 40997078 ~ 41000503 (+)
LOC103036716 LOC103036716 other downstream 118348 41010879 ~ 41015927 (+)

Expression


Co-expression Network