LOC103040175 (LOC108411462)


Basic Information

Item Value
gene id LOC103040175
gene name LOC108411462
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 40755687 ~ 40770159 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678557.1
GGGGGGATCGGGGAAGAAAATTGAGGTGCTCTGCTGCAAGGATGTGGAATCCAGGGATAGAAATCAACATTTTAGACTCAGAGGATGAGAGCATCACATCTTCAGAGGATGAACGAGACATTCAGTGTGAAATTCTAGAGAAACAACGAGATGAAGCCAACCACAGGCTGTCTAAAATGGAGGAAGCATCATCCCAGCTGCTTAAGGAGATAGACATGCTGGAGATGCAGTTTGAGATTGAACGTTCTTGCAGAGAGAATGCTGAAGCCTTCGCTTTAAAAatgacaaaagaaaacaaagtctTAAAGAGAAGAAGCCAGGCCCTCCTGCCCCTCATCCCAGAGCTGCCTGAAAAGCTGGCCTCTCTGAACACCGACCTGGAAGATGACCCTGACCCTGACCTTAACACTTCAGGAGAAGCTGAAGAAGAACCTCTCCTTAAAAGTCAGGCCCAGATTAGAGAGCTCCAGTCCTCAGTGGATCAGCTCTTGGGTGAGAAGATACAGCTGTGTGAGCAGATGGAGGCCTTGCGAAAGGAAAAGGAGGAACTGAAAGAACAGCTTGCAATGGAAGTTGAGGAGAAAGAAGCCATTTTGAGGAAATTAACAAAGCAGAGTCGAACAGTGAACAAAATGAAAAGAGTATCCCAGCTTGTAACAGAAGAGTTTTCAGAAATTACACAAAAGCTGGAGATAGAGCAAGGGCTCCGGCATCATGCTGAGGTTTTTGCACAGCAGGTTCTGGTGAAGCAGAAGGAGAGTCACAGGCAGAGCATGGCCATTGTCCAGAAtgcagagacagacacacagcttCAGCAGGCTTTGGAGCAAGTGGCACAAATCAATAAAGCTTTGGAGGAGATACGACTTCATCACCAACAGCagAGGAGTCAGTCTCAGTCAGCTATGGAGGAGTTTAATGCTCTTGCTGAGCTGCAGGTGGTCAGAGCTCAGTTAGCGACCAGTGAGAAAGAGCGGCTGAAGATGGAGAATCAGCTCAGAGATTCACAAATGACTGTTAGAGCACTGCAGGAGGAAGTTAAGCAGCTTCAGAATGGGCAGAAAGAGGCTCCTCCCATTCCATCAGAGCAATCAGATGAGGGGAACACCACGACAGCTCTGcccgctcctcctcctcctcctccacctccacctcctcctcctcctccacctcctcctcctccccctcctgTCCTCTCCACAACTCCTGCTGACCCACTGGACGCTTTGAGGAACAGAAGGAAAGGTGGAAACACTACGACTGAGCCTAAGAAACCCGCCCCGACCGTGGATGTGAAGGCCAGGGCAGTGGATGAAATGATGGAAAGAATTAAGAAAGGCATCATTTTGAAACCCACCCTGAAGCCCCAACAGgCGAGCCCAGAGGAAGACAGTGCATggaagGACCAAAGAAGTGAGAAGAGGAAATCTGCTGTGCTGGAGTTGCAGGGGATGCTGGATTCCATGAAGAGACCGGGTCACAGAAGGGTGATGTCCAGGAAGCGGATTAGTCGTAACGTCGGGGAGGCGGAGCTTCAGCTTGTCCTGCAGAGAAGAAGACGAGCAATGGGGGATGAGAATGGGACATCAAAAACCCAAGATCCACCTTCTGCAGGCCCAGCCTCAAACTCATCTCCCTGGCAAGCAGAGAGCTGCAGTGCCCCTGTCCTCCGCAGGCTGAAGCAGAACCAGGAGAAGAGGCACTCACGCATCCGAGCATCAGAGTGCATTATCTGGGAGGACAGCTGAAGTTGGGAGAGTTTGATTGAAAATCAGTTTTCTGCAGTGGTCACAAAGTGTTAACTCTGATCTAGCAGTCTTATAATAAAGCTGACTCCAGTATCTCTAAAATGCAAATGCAGGGTTTTGTGCTCTTATtgaaattttttaaaatatgaggCTCATCTTTACAGGCTGACAGAAAATTTCTGGCTGAAAACACAGCGAATATCTACGTTTTGATTGTTGTCAATTCCGTGTTTGAAAAAAATGGGATGGCAAGGCGCATTCATTTTGGACAATGGTCCCATTCACCCATTTTTATTTCAAGGTTAAGTGcagacaaatgaaaaaaaaggaaagaaaagaaagagaaactgtCCAAGGACTTTGAGGACATTCAGAACAgttaagaaagaaataaaatgcacCTTCCAATTTCCTGCTCTCAGCCTTTCCTCATAGATTTTTCTGCTTCCTGCATTCCTGCTAAGGAATGAGTCCTTCTGTTATAAGATTTTGACTGctttgaggtgtgtgtgtatgtgtgtgtgtttctgtgtgcgTATGTTTAAAAGCCTTTAGGTGGGTTCATTCGTCCATCAAGAAGACTGAGATGGGGAGAAAGGTGCTCTTTCTCCTCACACCTCCGCACTCCCGTCCTTtgataaaagcattttaaatggaggGGAATTATTTGCACGGTAGCGCCTCTTGGCCTTCTGCTTTTAAAACCAATTTATTCTATAAGGATTCTTTACCCCCTGGAGAGAGCCCTTTATCTAGCAAACATTATAAAGAATTTATGTCTCACCCTC

Function

NR:

description
PREDICTED: shootin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678557.1 True 2536 mRNA 0.47 18 40755687 40770159

Neighbor

gene id symbol gene type direction distance location
vax2 vax2,LOC107755639,LOC107572133,LOC107750765 coding upstream 26459 40701526 ~ 40729228 (+)
trnak-cuu_7 NA coding upstream 141810 40613805 ~ 40613877 (+)
trnak-cuu_6 NA coding upstream 142229 40613386 ~ 40613458 (+)
trnak-cuu_5 NA coding upstream 142648 40612967 ~ 40613039 (+)
trnak-cuu_4 NA coding upstream 143067 40612548 ~ 40612620 (+)
tex261 tex261,LOC106577837,LOC107755640 coding downstream 2421 40772580 ~ 40782430 (+)
LOC111194402 NA coding downstream 87716 40857875 ~ 40864636 (+)
LOC107197097 NA coding downstream 103545 40873704 ~ 40882903 (+)
LOC111194221 NA coding downstream 117952 40888111 ~ 40892531 (+)
LOC103042443 NA coding downstream 144480 40914639 ~ 40923412 (+)
G148037 NA non-coding upstream 114817 40632244 ~ 40640870 (+)
G148038 NA non-coding upstream 122236 40630558 ~ 40633451 (+)
G147984 NA non-coding upstream 219045 40534279 ~ 40536642 (+)
G147995 NA non-coding upstream 223007 40516040 ~ 40532680 (+)
G147993 NA non-coding upstream 255404 40493836 ~ 40500283 (+)
G148084 NA non-coding downstream 53961 40824120 ~ 40826574 (+)
G148086 LOC108411458 non-coding downstream 62228 40832387 ~ 40833149 (+)
LOC111194222 NA non-coding downstream 136416 40906575 ~ 40908153 (+)
G148103 NA non-coding downstream 138745 40908904 ~ 40910269 (+)
G148105 NA non-coding downstream 164130 40934289 ~ 40938202 (+)
c16h20orf27 cunh20orf27,c7h20orf27,si:ch211-74f19.2,LOC107755635,LOC107697474 other upstream 60909 40667240 ~ 40694778 (+)
G147592 NA other upstream 1604487 39147599 ~ 39151200 (+)
G147496 NA other upstream 2140332 38614878 ~ 38615355 (+)
c16h4orf48 cunh4orf48 other upstream 3713460 37038935 ~ 37042227 (+)
acap1 acap1,LOC107595305,LOC107731905,LOC107683535,LOC107675497 other upstream 4036400 36690693 ~ 36719287 (+)
LOC103041218 LOC108411459,LOC108267979 other downstream 66165 40836324 ~ 40870513 (+)
LOC107197094 NA other downstream 124385 40894544 ~ 40902605 (+)
LOC103036120 NA other downstream 226919 40997078 ~ 41000503 (+)
LOC103036716 LOC103036716 other downstream 240720 41010879 ~ 41015927 (+)

Expression


Co-expression Network