LOC103046951


Basic Information

Item Value
gene id LOC103046951
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 36344210 ~ 36352421 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678460.1
TGCCTTTCACCAAAATAGCTCTACCAAGGCCTTCAACCAAGATGGAGTGTTTGGTGACTGTTTTTGGTCTACTTCTGTCGTTGTTGCTCTTTGGTGTTCTGAATGTTGAATGTTACACAAATGCTCCTTCACCACTTGTCAAGTCGATGCCTGAGCTTGGGGCTAAACAAAGCGGCTCAAATGGTGCCTGCAGTGGCCAGTCCTGCCTGCGCACTGTAGCTGTGAAATGTGGCAAGTCCTCCATGGAGGTCCAGGTTAAAGCTGATTTGTTTGGTACAGGTGTTCCTGTAGAGGCTAGTGAACTGACCGTGTTGGCTGCAGGTACTGATGAACACTTCTGCAGAGTCACAGTGGCTGAAGACGCTCAATATAAGATTGAGGTTCCATTTAACAAGTGTGGTACTGGCTTTCAGATGAATGATGATTGGTTGATCTACTCTAATCTCCTGCTCTATACTCCCACTCCTTCTCCATATCGTATTCTGAGAATGAGCCCTGCGACCATTCCCATTCAGTGCTGGTTCAGTAGGAAGTTCAGAGTGAGCAGTCAGGCTGTTGTACCTACCTGGGCACCATTTAGCTCCACTTTGTCCCAAGAGAGTAAATTGGACCTGGGCATGAAGCTCATGACAAGTGACTGGAGCAGTGAGCTGCTGTATGGTGTCTACCAACTGGGTGAGGTTATACATGTGGAAGCCTCAGTGGAGATGGGTACACACATGCCTCTGCGTGTTTATGTGGACTCCTGTGTTGCTACACAGTCACCTGATGTTAACACCAGCCCCAGATATGCTTTCATTGAGAACAACGGGTGTATGATGGATGGTCTAATAACAAGCTCCACTGACTCCTACTTCCTGCCCCGCCTTCAAAACGACAGACTGAGATTTCAGCTGGAAGCCTTCATGTTTCATGATTCTCCCAGTAATGCCAGTGTGCTCTTCGTCACCTGTATTCTGAAGGCTGTGCTTATTACACAGAGCAGTCCTGAGCAGCGGGCTTGCTCTTTCATTGATGGACGGTGGAGATCTGCAGATGACACTGACCAGGTGTGTCAGTCCTGTAGCCACAGTGCCTCTGCTAATAGTTTGGATCAGCCCGTCCAATACAACCAGCCTAGCCAAAGCGATCAGCAAACAGtatgGAAACAGCAAGCCACACTTGGACCTTTTGTTGTCCAACCGTGACAAAGTGATCAGTGACTGCTGTCTGCTTTACTTAATGCTTGGCACAGATGTTGATCGTCCAGCTCATCTATTAAAGTTTTTACACACCCTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678460.1 True 1280 mRNA 0.48 9 36344210 36352421

Neighbor

gene id symbol gene type direction distance location
cnpy4 cnpy4 coding upstream 1604 36339117 ~ 36342606 (+)
LOC103024410 LOC101154659,LOC107707922,LOC108412583,LOC105030858,LOC107684956 coding upstream 310946 36019444 ~ 36033264 (+)
col4a5 col4a5 coding upstream 417627 35866845 ~ 35926583 (+)
sema4f sema4f,LOC101074835 coding upstream 632996 35621144 ~ 35711214 (+)
LOC103027364 dok1 coding upstream 826675 35493645 ~ 35517535 (+)
LOC103046647 NA coding downstream 6042 36358463 ~ 36379597 (+)
LOC103037804 NA coding downstream 100165 36452586 ~ 36459578 (+)
LOC111194361 NA coding downstream 177177 36529598 ~ 36530442 (+)
LOC103044585 LOC103044585 coding downstream 197713 36550134 ~ 36552043 (+)
LOC103044291 NA coding downstream 202714 36555135 ~ 36560745 (+)
G146721 nhsl2 non-coding upstream 227299 36112153 ~ 36116911 (+)
G146713 NA non-coding upstream 297451 36037008 ~ 36046759 (+)
G146708 rasl11a,LOC108412587,LOC107596470,LOC107707904 non-coding upstream 330389 36011569 ~ 36013821 (+)
G146673 NA non-coding upstream 401878 35941105 ~ 35942332 (+)
G146670 NA non-coding upstream 416851 35926847 ~ 35927359 (+)
G146783 NA non-coding downstream 33635 36386056 ~ 36386348 (+)
G146798 NA non-coding downstream 89275 36441696 ~ 36443509 (+)
G146799 NA non-coding downstream 89737 36442158 ~ 36443923 (+)
G146808 NA non-coding downstream 121750 36474171 ~ 36482055 (+)
G146816 dvl2 non-coding downstream 149977 36502398 ~ 36508994 (+)
cct7 cct7,LOC107697251,LOC107721663,LOC107583281,LOC107744273,LOC107691460,LOC107571935,LOC102781788 other upstream 937880 35399778 ~ 35406330 (+)
LOC103033902 pcolce2,pcolceb,LOC108428564,LOC107711558,LOC107557504,LOC107677833,LOC107750313 other upstream 2266235 34067581 ~ 34077975 (+)
pcdh7 pcdh7,LOC107568147,LOC107684944,LOC107561555,LOC107681559,LOC107753999 other upstream 3239981 32879690 ~ 33104229 (+)
G146104 NA other upstream 3731648 32612125 ~ 32612562 (+)
trnae-uuc_22 NA other upstream 4272647 32071314 ~ 32071563 (+)
G146805 acadvl,LOC107731915,LOC107595296,LOC107675499 other downstream 139091 36491512 ~ 36494457 (+)
acap1 acap1,LOC107595305,LOC107731905,LOC107683535,LOC107675497 other downstream 338272 36690693 ~ 36719287 (+)
c16h4orf48 cunh4orf48 other downstream 686514 37038935 ~ 37042227 (+)
G147496 NA other downstream 2262457 38614878 ~ 38615355 (+)
G147592 NA other downstream 2795178 39147599 ~ 39151200 (+)

Expression


Co-expression Network