G89619


Basic Information

Item Value
gene id G89619
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 10012150 ~ 10012423 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU120537
CAAAACTCCAGCAAATTTAAGCATGtcttatataaacatatacaacatacaaataacaatattgcagaattaataataatcaagGCTGATCTATACATTATGTGCCGAatatgggcacttctggcgtaaaggtgttttattgctttgtttAAGTAAAACAAAGAACACATTTCCTATAATACACAATTACTGTTTGTTAGCCATATTTAACATATTGAGAAAAACAACCTTAACACAACAAATGTGGCACATATAAACTTTAGGCACATTTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120537 True 274 lncRNA 0.30 1 10012150 10012423

Neighbor

gene id symbol gene type direction distance location
LOC103025907 NA coding upstream 358 10000994 ~ 10011792 (+)
LOC103040328 NA coding upstream 37569 9968033 ~ 9974581 (+)
gapdh gapdh coding upstream 47545 9958551 ~ 9964605 (+)
LOC103028234 anfc1,nppcl,LOC103028234,LOC108428938,LOC107744681,LOC107685603,LOC107699924 coding upstream 61908 9945738 ~ 9950242 (+)
nop2 nop2,nol1 coding upstream 76612 9922743 ~ 9935538 (+)
LOC103039700 NA coding downstream 13757 10026180 ~ 10071479 (+)
LOC111193325 LOC106515060 coding downstream 89127 10101550 ~ 10105116 (+)
LOC103023172 si:dkey-27n14.1,LOC108428912,LOC107749301,LOC107685608,LOC107596760,LOC107678125 coding downstream 194140 10206563 ~ 10212681 (+)
LOC103038777 LOC108262134,LOC108441933,LOC107741773,LOC107587875,LOC107689897,LOC105901617 coding downstream 605099 10617522 ~ 10632206 (+)
tnfaip8l2 tnfaip8l2,LOC106605333,LOC107587822,LOC107741744,LOC107689840 coding downstream 623511 10635934 ~ 10654955 (+)
G89492 LOC108429024 non-coding upstream 219141 9792682 ~ 9793009 (+)
G89455 NA non-coding upstream 399170 9612722 ~ 9612980 (+)
G89454 NA non-coding upstream 403663 9603646 ~ 9608487 (+)
G89436 NA non-coding upstream 477867 9533642 ~ 9534283 (+)
G89429 LOC108429011,LOC108268485,LOC101064094,LOC107741984,LOC107684166 non-coding upstream 497463 9513107 ~ 9514687 (+)
G89624 rpl18 non-coding downstream 77461 10089884 ~ 10453879 (+)
G89636 NA non-coding downstream 93702 10106125 ~ 10180419 (+)
LOC103022254 NA non-coding downstream 215520 10227943 ~ 10289605 (+)
G89665 NA non-coding downstream 231904 10244327 ~ 10244683 (+)
G89667 NA non-coding downstream 236886 10249309 ~ 10302377 (+)
iffo1 iffo1 other upstream 11236 9975197 ~ 10000914 (+)
G89453 NA other upstream 401896 9602771 ~ 9610254 (+)
sumo1 NA other upstream 1762716 8242319 ~ 8249434 (+)
LOC111193322 NA other upstream 1932122 8077097 ~ 8080028 (+)
G88849 NA other upstream 2432190 7578610 ~ 7579960 (+)
G89805 NA other downstream 673234 10685657 ~ 10686056 (+)
G89806 NA other downstream 675843 10688266 ~ 10688820 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other downstream 767679 10780102 ~ 10791128 (+)
LOC111193328 NA other downstream 891260 10903683 ~ 10907172 (+)
LOC103025787 LOC103025787,LOC100536175,LOC107587908 other downstream 2122856 12135279 ~ 12138862 (+)

Expression


Co-expression Network