G89768


Basic Information

Item Value
gene id G89768
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 10460437 ~ 10460823 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU120772
tatttaatgacttttgtAGCCTTCACCTGACTGATATCTATGAATAATGAGATACCTCTGATGCTCTGGCATCTCTTTGTGGACCATggcttgtgctgaaagatgtgGCTACAAAAATATCAGGACAAGCCTACTAGAACAGTTAAACTTTATTTGGAGTTGATCAGAGGCACTTTAATTGTTGACAGGTGTGTGCTGACTCCAATTTAAAGTGAGTTTGAAGGTTATTGGTTAAATTtgaacacagcaacaccccTAGTTATAAAAGGGTGTGCACACTTATGCAACCTCAATatctcagttgtttatttttacttcacctccctgaaagatttctgtttgtttttcaattgcattgtacaggttataggtcacattataggtaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120772 True 387 lncRNA 0.37 1 10460437 10460823

Neighbor

gene id symbol gene type direction distance location
LOC103022457 sema6c,LOC108429044 coding downstream 35960 10249299 ~ 10424477 (-)
LOC103024028 kcnj14,LOC107550821,LOC107749008,LOC107685531,LOC107596661 coding downstream 268639 10165676 ~ 10191798 (-)
LOC103039091 LOC108429041 coding downstream 299441 10106091 ~ 10160996 (-)
LOC103039397 LOC103039397 coding downstream 361991 10095776 ~ 10098446 (-)
rpl18 rpl18 coding downstream 366024 10090404 ~ 10094413 (-)
tmod4 tmod4,LOC107663362,LOC107689841 coding upstream 203651 10664474 ~ 10682439 (-)
LOC103046057 NA coding upstream 264591 10725414 ~ 10728744 (-)
LOC103044830 LOC103044830 coding upstream 330434 10791257 ~ 10795440 (-)
LOC103044235 catk,LOC108441922,LOC107576564 coding upstream 343659 10804482 ~ 10811848 (-)
rrnad1 NA coding upstream 431230 10892053 ~ 10904478 (-)
G89766 NA non-coding downstream 6973 10452569 ~ 10453464 (-)
G89732 NA non-coding downstream 394431 10064160 ~ 10066006 (-)
G89715 NA non-coding downstream 459522 9984872 ~ 10000915 (-)
G89709 NA non-coding downstream 493988 9965409 ~ 9966449 (-)
G89698 nop2,LOC107749104,LOC107699935,LOC107685519 non-coding downstream 532620 9924873 ~ 9927817 (-)
G89769 NA non-coding upstream 2842 10463665 ~ 10464175 (-)
G89770 NA non-coding upstream 34016 10494839 ~ 10495048 (-)
G89773 NA non-coding upstream 72710 10533533 ~ 10535075 (-)
G89776 NA non-coding upstream 129371 10590194 ~ 10590624 (-)
G89880 NA non-coding upstream 331327 10792150 ~ 10865151 (-)
G89751 NA other downstream 235774 10223520 ~ 10224663 (-)
LOC103025178 LOC108429038 other downstream 417584 10011817 ~ 10042853 (-)
G89708 gapdh,LOC107550818 other downstream 495831 9961282 ~ 9964606 (-)
G89690 zyx,LOC108428910 other downstream 558737 9894825 ~ 9901700 (-)
LOC103029706 LOC108429024,LOC108268385,LOC107749226,LOC107685514 other downstream 606338 9784623 ~ 9854099 (-)
lysmd1 lysmd1 other upstream 194648 10655471 ~ 10659606 (-)
vps72 vps72,LOC107571619 other upstream 221533 10682356 ~ 10695334 (-)
LOC103045558 ensab,LOC103045558,LOC108441925,LOC108268136,LOC107741750,LOC107663348,LOC107587831,LOC107597988 other upstream 272112 10732935 ~ 10743717 (-)
LOC103031398 dgat1b,LOC108436588,LOC108267870,LOC107741726,LOC107552801,LOC107671724,LOC107724797 other upstream 1147648 11608471 ~ 11630001 (-)
LOC103024123 LOC108436541 other upstream 1701465 12162288 ~ 12169694 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G142575 NA non-coding NC_047603.1 CM018549.1 3415522 ~ 3435565 (+)