LOC103044830 (LOC103044830)


Basic Information

Item Value
gene id LOC103044830
gene name LOC103044830
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 10791257 ~ 10795440 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249764.3
CTGACACGTGATATCACACTTTAAAAACCGTGGTTTAGATTCAGTGGGCAGCTTTCACCTCAGCCAGCAGCTTCAGCTTCTCTCGTTTGGCTCAGGTCACGCAGGTAAATATGCTGAGAGGTTTGTTTCTCACATTGCTGTGTGGGGCAGCAGTGGCTCTGTCTGACCCAAATCTGGACCAACATTGGCAGTTGTGGAAGAAGAAGCATTATAAGTCTTACTCCACTGAGGTTGAGGAGATGGGTCGGAGGGAGATTTGGGAGAGAAACTTGCAGCTAATCAGCCTGCATAATCTTGAAGCCTCAATGGACATTCACACCTATGACTTGGCCATGAACCATATGGGAGACCTGACTAGAGAAGAAATCCTGGATATGATGGCTGGCACTCGTGTGCCTAGTCACCTAAAGAAGCGGTCCTCATTTGTGTCTTTTGCTGGGGTTCAAGTACCAGATTCGGTTGACTGGAGGGAAAAGGGTTATGTCACTAATGTGAAGCAACAGGGTGCATGTGGTTCATGCTGGGCATTTAGTGCTGCTGGTGCTTTGGAGGGTCAGCTGATGAGGACCACAGGACAGCTGGTGTCTCTTAGCCCACAGAACTTGGTGGATTGCTCCTCTAAGTATGGGAATAAGGGGTGCCATGGAGGCTTCATGTCTCGGGCCTTCCAGTACGTCATCGATAATGGTGGTATAGATTCTGATGCGTCTTACCCATACAATGGAATGGACGGACAGTGCAAATATAACCCATCAGATCGTGCTGCCAACTGCACCAGTTACAGTTTTCTCCCAGAGGGTAATGAGGAGGCTCTGAAAACTGCTGTGGCCACCATCGGACCAGTTTCTGTGGCTATTGATGCCACTCGACCACAGTTTATATTGTACCGCAGtgGAGTCTACTATGACCCATCCTGTACCAAGAACGTGAACCACGGAGTGCTGGTTGTAGGATATGGCACATTAAATGGAGAGGACTACTGGCTTGTGAAAAACAGCTGGGGCACTGGCTTTGGAGATGGAGGCTACATTCGCATGGCTCGCAATAAGGGCAATATGTGTGGTATTGCCAGTTATTGTTGTTACCCCATCATGTGATGACTGACTAActgaaccttttaaaaaaaaaatcctttatggctttattttgctttaatgtattcattttatatcatttttaaatcatgtat

Function

NR:

description
cathepsin S

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K01368 CTSS; cathepsin S

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249764.3 True 1189 mRNA 0.47 8 10791257 10795440

Neighbor

gene id symbol gene type direction distance location
LOC103046057 NA coding downstream 62513 10725414 ~ 10728744 (-)
tmod4 tmod4,LOC107663362,LOC107689841 coding downstream 108818 10664474 ~ 10682439 (-)
LOC103022457 sema6c,LOC108429044 coding downstream 366780 10249299 ~ 10424477 (-)
LOC103024028 kcnj14,LOC107550821,LOC107749008,LOC107685531,LOC107596661 coding downstream 599459 10165676 ~ 10191798 (-)
LOC103039091 LOC108429041 coding downstream 630261 10106091 ~ 10160996 (-)
LOC103044235 catk,LOC108441922,LOC107576564 coding upstream 9042 10804482 ~ 10811848 (-)
rrnad1 NA coding upstream 96613 10892053 ~ 10904478 (-)
hapln2 NA coding upstream 145244 10940684 ~ 10946938 (-)
nes NA coding upstream 335699 11131139 ~ 11142620 (-)
gpatch4 NA coding upstream 362786 11158226 ~ 11163971 (-)
G89776 NA non-coding downstream 200633 10590194 ~ 10590624 (-)
G89773 NA non-coding downstream 256182 10533533 ~ 10535075 (-)
G89770 NA non-coding downstream 296209 10494839 ~ 10495048 (-)
G89769 NA non-coding downstream 327082 10463665 ~ 10464175 (-)
G89768 NA non-coding downstream 330434 10460437 ~ 10460823 (-)
G89895 s100a1,LOC103041356,LOC108441918,LOC108272706,LOC107587912,LOC107689908 non-coding upstream 94466 10889906 ~ 10891701 (-)
LOC111193329 NA non-coding upstream 101107 10896547 ~ 10897966 (-)
G89915 NA non-coding upstream 131399 10926839 ~ 10929360 (-)
LOC103039505 NA non-coding upstream 156833 10952273 ~ 11028731 (-)
G90016 NA non-coding upstream 188252 10983692 ~ 10984883 (-)
LOC103045558 ensab,LOC103045558,LOC108441925,LOC108268136,LOC107741750,LOC107663348,LOC107587831,LOC107597988 other downstream 47540 10732935 ~ 10743717 (-)
vps72 vps72,LOC107571619 other downstream 95923 10682356 ~ 10695334 (-)
lysmd1 lysmd1 other downstream 131651 10655471 ~ 10659606 (-)
G89751 NA other downstream 566594 10223520 ~ 10224663 (-)
LOC103025178 LOC108429038 other downstream 748404 10011817 ~ 10042853 (-)
LOC103031398 dgat1b,LOC108436588,LOC108267870,LOC107741726,LOC107552801,LOC107671724,LOC107724797 other upstream 813031 11608471 ~ 11630001 (-)
LOC103024123 LOC108436541 other upstream 1366848 12162288 ~ 12169694 (-)
LOC103038102 iqgap3,LOC106605450,LOC105031059,LOC105908924 other upstream 1925529 12720969 ~ 12743217 (-)
G90571 mpp6,LOC108267518,LOC108436535,LOC107596657,LOC107749029 other upstream 2155172 12950612 ~ 12967291 (-)
LOC103029309 osbpl3,osbpl3b,LOC108441521,LOC107678127,LOC107550826,LOC107685532 other upstream 2226555 13021995 ~ 13135114 (-)

Expression


Co-expression Network