LOC111193329


Basic Information

Item Value
gene id LOC111193329
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 10896547 ~ 10897966 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650433.1
ctccCTTTCACCTTCACTTTATACTGGGCACTCATTCAGAATCGGTGCTGCCACTACTGCTGCACAAATTGGTCTACCAATATCATCAATTAAGGCCCTCGGACGATGGACTTCAGCATCATACGAATCATACATAAGACCAGACAAACATCTTGTTCGGGATGCCCAGATGTCTCTGAGTAAAGCTATCTAGACTTCCTGAACCAGacgcCGACTGTCGTTTcgccctcctccttccccaccgcctccagttcgGTCCCGCCGGTTGCCCAGGGGATTGGCTCCGCCCCCGCCGTACCTATACGGCAGGATCTGCAGGATGCAGACGCTGCAGACCTGGGCTTTCGATGGGGCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650433.1 True 357 lncRNA 0.54 3 10896547 10897966

Neighbor

gene id symbol gene type direction distance location
LOC103044235 catk,LOC108441922,LOC107576564 coding downstream 84699 10804482 ~ 10811848 (-)
LOC103044830 LOC103044830 coding downstream 101107 10791257 ~ 10795440 (-)
LOC103046057 NA coding downstream 167803 10725414 ~ 10728744 (-)
tmod4 tmod4,LOC107663362,LOC107689841 coding downstream 214108 10664474 ~ 10682439 (-)
LOC103022457 sema6c,LOC108429044 coding downstream 472070 10249299 ~ 10424477 (-)
hapln2 NA coding upstream 42718 10940684 ~ 10946938 (-)
nes NA coding upstream 233173 11131139 ~ 11142620 (-)
gpatch4 NA coding upstream 260260 11158226 ~ 11163971 (-)
LOC103036365 NA coding upstream 268465 11166431 ~ 11169434 (-)
LOC103035739 lmna,LOC107704890,LOC107598000,LOC107587813,LOC107671682 coding upstream 358432 11256398 ~ 11298847 (-)
G89895 s100a1,LOC103041356,LOC108441918,LOC108272706,LOC107587912,LOC107689908 non-coding downstream 4846 10889906 ~ 10891701 (-)
G89880 NA non-coding downstream 31396 10792150 ~ 10865151 (-)
G89776 NA non-coding downstream 305923 10590194 ~ 10590624 (-)
G89773 NA non-coding downstream 361472 10533533 ~ 10535075 (-)
G89770 NA non-coding downstream 401499 10494839 ~ 10495048 (-)
G89915 NA non-coding upstream 28873 10926839 ~ 10929360 (-)
LOC103039505 NA non-coding upstream 54307 10952273 ~ 11028731 (-)
G90016 NA non-coding upstream 85726 10983692 ~ 10984883 (-)
G90028 NA non-coding upstream 163840 11061806 ~ 11124408 (-)
G90051 LOC107747284 non-coding upstream 251676 11149642 ~ 11150909 (-)
LOC103045558 ensab,LOC103045558,LOC108441925,LOC108268136,LOC107741750,LOC107663348,LOC107587831,LOC107597988 other downstream 152830 10732935 ~ 10743717 (-)
vps72 vps72,LOC107571619 other downstream 201213 10682356 ~ 10695334 (-)
lysmd1 lysmd1 other downstream 236941 10655471 ~ 10659606 (-)
G89751 NA other downstream 671884 10223520 ~ 10224663 (-)
LOC103025178 LOC108429038 other downstream 853694 10011817 ~ 10042853 (-)
LOC103031398 dgat1b,LOC108436588,LOC108267870,LOC107741726,LOC107552801,LOC107671724,LOC107724797 other upstream 710505 11608471 ~ 11630001 (-)
LOC103024123 LOC108436541 other upstream 1264322 12162288 ~ 12169694 (-)
LOC103038102 iqgap3,LOC106605450,LOC105031059,LOC105908924 other upstream 1823003 12720969 ~ 12743217 (-)
G90571 mpp6,LOC108267518,LOC108436535,LOC107596657,LOC107749029 other upstream 2052646 12950612 ~ 12967291 (-)
LOC103029309 osbpl3,osbpl3b,LOC108441521,LOC107678127,LOC107550826,LOC107685532 other upstream 2124029 13021995 ~ 13135114 (-)

Expression


Co-expression Network