G89895 (s100a1,LOC103041356,LOC108441918,LOC108272706,LOC107587912,LOC107689908)


Basic Information

Item Value
gene id G89895
gene name s100a1,LOC103041356,LOC108441918,LOC108272706,LOC107587912,LOC107689908
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 10889906 ~ 10891701 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU120933
ACTTAACAGAagttcattgcaatattttattaatgggCCACAGAATATAACCTTAACATCTCAGTGTTTCATAGTTTCAACAAAGAAATCATTACAAGCCACAGTAAGGGCTGCCACTAAAACTACAAACTCCTGGAAGTCCACCTCTCCGTCCCGGTTCTCATCCAGATCAGACATTATCTTCTCCACAACCAGCGGATCTTTAGTTGCTGCTAAGAAGTCACTTAGTTCTCCCTGTAGAAGACTCTTCAGCTCCACTCTACTCAGCTTGTATTTGTCTCCCTCTCTGGAAGAATACGTGTGGAACACTTTTATGAGGCTGTCCATTGCGTTCTCCAGCTGAGATACCATGATGTTTTCTGCAGGGGTGACCTGTGCAGAGGAATGAGCTCTTTATAtggctcctcctcctcttcctccttctcATAGTTGAGTTGCAGTCCACCTGTCCACCCTGTCTGCTGTTTTATACACCTGAATCGCATCACTG
>TU120934
ACTTAACAGAagttcattgcaatattttattaatgggCCACAGAATATAACCTTAACATCTCAGTGTTTCATAGTTTCAACAAAGAAATCATTACAAGCCACAGTAAGGGCTGCCACTAAAACTACAAACTCCTGGAAGTCCACCTCTCCGTCCCGGTTCTCATCCAGATCAGACATTATCTTCTCCACAACCAGCGGATCTTTAGTTGCTGCTAAGAAGTCACTTAGTTCTCCCTGTAGAAGACTCTTCAGCTCCACTCTACTCAGCTTGTATTTGTCTCCCTCTCTGGAAGAATACGTGTGGAACACTTTTATGAGGCTGTCCATTGCGTTCTCCAGCTGAGATACCATGATGTTTTCTGCAGGGGTGACCTGTGTACAGCAACAAATTCCACACCCACAGTAAAGAACCACTTTTTAAAAAGGATCCACAACAATTTTTTGCACATGTAGCAAGTCAGCACCTACATAATAGCAACTGAATAACATCTGCAAGTATTGTCCAAAACGCATTCTCTTGCATCATCAGCGTCACATGGTTCTGTTTCTCGCCTCATCAAGAACACCTGCTGACCCATGACCCCCTCAGATCCACAGAGCAACTTCTCACACACTGTTAGAGAGATCCAGTGTCCGAGAGGTAACAAGTGGTTTGGCCCCAGCAGACTGATGATGTTTAGTGGGAATAGGAGGACAGGAGAGCATCAAATATTTAACTAGCCTTTTGTCTGCAGCTTAAGGGGATGAGAATGAGCATTTGACATTAAGCCTTTTCCAGCACTTGTGCTCTATAAGTAA

Function

symbol description
s100a1 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to act upstream of or within regulation of heart contraction. Predicted to be active in cytoplasm. Is expressed in several structures, including gill; gut; hematopoietic system; olfactory epithelium; and renal system. Orthologous to human S100A1 (S100 calcium binding protein A1).

NR:

description
protein S100-A1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120933 False 490 lncRNA 0.44 3 10889906 10891701
TU120934 True 798 lncRNA 0.43 2 10890623 10891701

Neighbor

gene id symbol gene type direction distance location
LOC103044235 catk,LOC108441922,LOC107576564 coding downstream 78058 10804482 ~ 10811848 (-)
LOC103044830 LOC103044830 coding downstream 94466 10791257 ~ 10795440 (-)
LOC103046057 NA coding downstream 161162 10725414 ~ 10728744 (-)
tmod4 tmod4,LOC107663362,LOC107689841 coding downstream 207467 10664474 ~ 10682439 (-)
LOC103022457 sema6c,LOC108429044 coding downstream 465429 10249299 ~ 10424477 (-)
rrnad1 NA coding upstream 352 10892053 ~ 10904478 (-)
hapln2 NA coding upstream 48983 10940684 ~ 10946938 (-)
nes NA coding upstream 239438 11131139 ~ 11142620 (-)
gpatch4 NA coding upstream 266525 11158226 ~ 11163971 (-)
LOC103036365 NA coding upstream 274730 11166431 ~ 11169434 (-)
G89880 NA non-coding downstream 24755 10792150 ~ 10865151 (-)
G89776 NA non-coding downstream 299282 10590194 ~ 10590624 (-)
G89773 NA non-coding downstream 354831 10533533 ~ 10535075 (-)
G89770 NA non-coding downstream 394858 10494839 ~ 10495048 (-)
G89769 NA non-coding downstream 425731 10463665 ~ 10464175 (-)
LOC111193329 NA non-coding upstream 4846 10896547 ~ 10897966 (-)
G89915 NA non-coding upstream 35138 10926839 ~ 10929360 (-)
LOC103039505 NA non-coding upstream 60572 10952273 ~ 11028731 (-)
G90016 NA non-coding upstream 91991 10983692 ~ 10984883 (-)
G90028 NA non-coding upstream 170105 11061806 ~ 11124408 (-)
LOC103045558 ensab,LOC103045558,LOC108441925,LOC108268136,LOC107741750,LOC107663348,LOC107587831,LOC107597988 other downstream 146189 10732935 ~ 10743717 (-)
vps72 vps72,LOC107571619 other downstream 194572 10682356 ~ 10695334 (-)
lysmd1 lysmd1 other downstream 230300 10655471 ~ 10659606 (-)
G89751 NA other downstream 665243 10223520 ~ 10224663 (-)
LOC103025178 LOC108429038 other downstream 847053 10011817 ~ 10042853 (-)
LOC103031398 dgat1b,LOC108436588,LOC108267870,LOC107741726,LOC107552801,LOC107671724,LOC107724797 other upstream 716770 11608471 ~ 11630001 (-)
LOC103024123 LOC108436541 other upstream 1270587 12162288 ~ 12169694 (-)
LOC103038102 iqgap3,LOC106605450,LOC105031059,LOC105908924 other upstream 1829268 12720969 ~ 12743217 (-)
G90571 mpp6,LOC108267518,LOC108436535,LOC107596657,LOC107749029 other upstream 2058911 12950612 ~ 12967291 (-)
LOC103029309 osbpl3,osbpl3b,LOC108441521,LOC107678127,LOC107550826,LOC107685532 other upstream 2130294 13021995 ~ 13135114 (-)

Expression


Co-expression Network