hapln2


Basic Information

Item Value
gene id hapln2
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 10940684 ~ 10946938 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249747.3
GCTACAGACCTCAGGCAGCtaaggagagggagggagagaaagaaagagggacaaagagacagggagagaaaggACCTAAATGATGAGTATGATGGAACGTGACTTTTGAAGATCAAGTGGATGAACAGACAACCAGCCATGCTTTGCCATCACAGCCTGGATCTTATTGATTTACATCTCTGAAGGAAAAAAGCCAGAAGCAGGAGGCCATAAAAGcCAGGGAGAGCTGCTCAAATATGAACTGCGCTACTTTTATCATGGTTGCTGCAAGTTTACTCTCATGGGCTGATTCCTTTTATCATCACAGCAGTAAAGGTAAAGAGAAGGAGCTCCAATATCTCGTGGAGCCACCAGTGTATCCTGCAGTAATGGCCCGGCGAGGAGAGAACATCACCCTGCCGTGTGTCATGCAGACCAAGCCTTCTCACTACAGAGTGAAATGGACTAAACTCGACCCTCTTCGACAAGGAGTACAAAATATTATCCTCATCTCAAACGGCCATGCTGATAAACACTACGGGGTCCTGGGGCCCAGAGCGAGTCTTCGCCGTGCACATGCTCTGGATCTCTCACTGCTCCTCTTTGGTCTAGAGCTGGAGGATGATGGCCAGTATCGCTGCGAGCTCATCAATGGCATCGATGATGAAAATGTGGATATTACTCTTGGGATTGAAGGGGTTGTGTTTCCTTATCAGAGCAGCCGAGGTCGATACAAACTCAACTACAATGATGCTAAAGAAGCCTGTGAAAAGCAGGATGGCACACTGGCAACATACATGCAGCTCTACAAAGCCTGGACAGAAGGTCTGGACTGGTGTAATGCCGGGTGGCTGAATGATGGCACAGTCCATTACCCGATAATTCACCCGCGGCCAGCCTGCGGAGGAGAACTTCTCGCAGGGATCCGAAGCTACGGACCTCAGCACAGGACAAAGGAGCACTTTGATGCCTTCTGTTTTACCTCTACCACTGAAGGTTCAGTATTCTACGTTCCAGGAGTGCTGAATTTCTCAGAAGCTCTACATGCGTGTAAGAAAGAAGGAGCGACGCTGGCTCGTGTTGGACAGCTCTACTCATCCTGGAAGTTCTTAAAAATGGACCAGTGTGATGGAGGCTGGCTGCAGGACGGCAGTGTGCGCTTCCCAATCACCAACCCAAGAAAACGCTGCGGAGGAATTTCAGAGGCAGGGGTCCACAGCTTTGGCTTCCCCAAACAGAGTGTGCGCATTTATGGGGCTTACTGCTACAGGTAAACTAACGGCATTAACGGCACTGTAAAAAGCAACATGCTGCACTGCAACAGTTCCAAGACATACTGGAAAAGCTgaaattttaatgatttttcagCATTATCCGCTGTGCTCACAGCAATAAAGATGGTATTGGTTATTACAAGAGCTGGGCTGAAAAGTTTGGTGCAGATACaactattatttttgtttaatttgttaaaaaaaatctttggagCAATACAAAGATTCCAAAATGGTTTCATTTTTGGGTAATGTATAAGTGTTATGTTTTCGGTTTTCCCAttctttatttaagtatttagttCTTTCTCAGTttgtaattttctatttttttgattCATATTGATTCTAGTTCGTCCTACAATTTGTACATAAATAATGTGTCTTCTTTTGTCTTCTGTATCAATAATGcataaaacaaaatgtgaatgtgtgttactACACAGATAAGagtctaattatttttattaatgtgcGCTCTCTAAACTCACACCCCTGGGGCAGTTAGCCAGGTTTGATACCTGGGTCCACTAAGCTGCTGGGGATGGGCTCTTAACGCTCTGTACCCAGGGGTGGCATAGCAAGGCTGACCCTGTGCTCTAACCCCAGCTTTCTAAGCTGGAATATGTGAAAAcgattaaataattccatagtactgtaaatatataataataaaaagcactTAAGATTTTGCTTGTAACTGCTTACCAAACCTTTTGATTTCTATTTGGATACTTGGATACTATAATATACATCTGTTAGATGTGTTGCTATgagttatttaaaatgttcatgaAATGCCATTGGATTTACtttagaacaaaaaaagaacaaaataatttCTCATTGATATTGTTAGTAAAacagctgttttatttatttatgatgaaACCCCAAGAACAAACACTGCATTTAATGGCACCATATACCAGATGGCACCTTATGGCTTGATCATTGTCTGacattataataaaacattgcaagatgaataaaataaccCATGAGCGTGTAAA
>XM_007249748.3
GCTACAGACCTCAGGCAGCtaaggagagggagggagagaaagaaagagggacaaagagacagggagagaaaggACCTAAATGATGAGTATGATGGAACGTGACTTTTGAAGATCAAGTGGATGAACAGACAACCAGCCATGCTTTGCCATCACAGCCTGGATCTTATTGATTTACATCTCTGAAGGAAAAAAGCCAGAAGCAGGAGGCCATAAAAGGTAAAGAGAAGGAGCTCCAATATCTCGTGGAGCCACCAGTGTATCCTGCAGTAATGGCCCGGCGAGGAGAGAACATCACCCTGCCGTGTGTCATGCAGACCAAGCCTTCTCACTACAGAGTGAAATGGACTAAACTCGACCCTCTTCGACAAGGAGTACAAAATATTATCCTCATCTCAAACGGCCATGCTGATAAACACTACGGGGTCCTGGGGCCCAGAGCGAGTCTTCGCCGTGCACATGCTCTGGATCTCTCACTGCTCCTCTTTGGTCTAGAGCTGGAGGATGATGGCCAGTATCGCTGCGAGCTCATCAATGGCATCGATGATGAAAATGTGGATATTACTCTTGGGATTGAAGGGGTTGTGTTTCCTTATCAGAGCAGCCGAGGTCGATACAAACTCAACTACAATGATGCTAAAGAAGCCTGTGAAAAGCAGGATGGCACACTGGCAACATACATGCAGCTCTACAAAGCCTGGACAGAAGGTCTGGACTGGTGTAATGCCGGGTGGCTGAATGATGGCACAGTCCATTACCCGATAATTCACCCGCGGCCAGCCTGCGGAGGAGAACTTCTCGCAGGGATCCGAAGCTACGGACCTCAGCACAGGACAAAGGAGCACTTTGATGCCTTCTGTTTTACCTCTACCACTGAAGGTTCAGTATTCTACGTTCCAGGAGTGCTGAATTTCTCAGAAGCTCTACATGCGTGTAAGAAAGAAGGAGCGACGCTGGCTCGTGTTGGACAGCTCTACTCATCCTGGAAGTTCTTAAAAATGGACCAGTGTGATGGAGGCTGGCTGCAGGACGGCAGTGTGCGCTTCCCAATCACCAACCCAAGAAAACGCTGCGGAGGAATTTCAGAGGCAGGGGTCCACAGCTTTGGCTTCCCCAAACAGAGTGTGCGCATTTATGGGGCTTACTGCTACAGGTAAACTAACGGCATTAACGGCACTGTAAAAAGCAACATGCTGCACTGCAACAGTTCCAAGACATACTGGAAAAGCTgaaattttaatgatttttcagCATTATCCGCTGTGCTCACAGCAATAAAGATGGTATTGGTTATTACAAGAGCTGGGCTGAAAAGTTTGGTGCAGATACaactattatttttgtttaatttgttaaaaaaaatctttggagCAATACAAAGATTCCAAAATGGTTTCATTTTTGGGTAATGTATAAGTGTTATGTTTTCGGTTTTCCCAttctttatttaagtatttagttCTTTCTCAGTttgtaattttctatttttttgattCATATTGATTCTAGTTCGTCCTACAATTTGTACATAAATAATGTGTCTTCTTTTGTCTTCTGTATCAATAATGcataaaacaaaatgtgaatgtgtgttactACACAGATAAGagtctaattatttttattaatgtgcGCTCTCTAAACTCACACCCCTGGGGCAGTTAGCCAGGTTTGATACCTGGGTCCACTAAGCTGCTGGGGATGGGCTCTTAACGCTCTGTACCCAGGGGTGGCATAGCAAGGCTGACCCTGTGCTCTAACCCCAGCTTTCTAAGCTGGAATATGTGAAAAcgattaaataattccatagtactgtaaatatataataataaaaagcactTAAGATTTTGCTTGTAACTGCTTACCAAACCTTTTGATTTCTATTTGGATACTTGGATACTATAATATACATCTGTTAGATGTGTTGCTATgagttatttaaaatgttcatgaAATGCCATTGGATTTACtttagaacaaaaaaagaacaaaataatttCTCATTGATATTGTTAGTAAAacagctgttttatttatttatgatgaaACCCCAAGAACAAACACTGCATTTAATGGCACCATATACCAGATGGCACCTTATGGCTTGATCATTGTCTGacattataataaaacattgcaagatgaataaaataaccCATGAGCGTGTAAA

Function

NR:

description
PREDICTED: hyaluronan and proteoglycan link protein 2

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005540 hyaluronic acid binding molecular_function
GO:0042802 identical protein binding molecular_function

KEGG:

id description
K06851 HAPLN2; hyaluronan and proteoglycan link protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249747.3 True 2266 mRNA 0.42 6 10940684 10946938
XM_007249748.3 False 2167 mRNA 0.42 5 10940684 10946938

Neighbor

gene id symbol gene type direction distance location
rrnad1 NA coding downstream 36206 10892053 ~ 10904478 (-)
LOC103044235 catk,LOC108441922,LOC107576564 coding downstream 128836 10804482 ~ 10811848 (-)
LOC103044830 LOC103044830 coding downstream 145244 10791257 ~ 10795440 (-)
LOC103046057 NA coding downstream 211940 10725414 ~ 10728744 (-)
tmod4 tmod4,LOC107663362,LOC107689841 coding downstream 258245 10664474 ~ 10682439 (-)
nes NA coding upstream 184201 11131139 ~ 11142620 (-)
gpatch4 NA coding upstream 211288 11158226 ~ 11163971 (-)
LOC103036365 NA coding upstream 219493 11166431 ~ 11169434 (-)
LOC103035739 lmna,LOC107704890,LOC107598000,LOC107587813,LOC107671682 coding upstream 309460 11256398 ~ 11298847 (-)
LOC103042566 mc5rb,LOC108410772,LOC107704891,LOC107741731,LOC107587811 coding upstream 371589 11318527 ~ 11326062 (-)
G89915 NA non-coding downstream 11324 10926839 ~ 10929360 (-)
LOC111193329 NA non-coding downstream 42718 10896547 ~ 10897966 (-)
G89895 s100a1,LOC103041356,LOC108441918,LOC108272706,LOC107587912,LOC107689908 non-coding downstream 48983 10889906 ~ 10891701 (-)
G89880 NA non-coding downstream 75533 10792150 ~ 10865151 (-)
G89776 NA non-coding downstream 350060 10590194 ~ 10590624 (-)
LOC103039505 NA non-coding upstream 5335 10952273 ~ 11028731 (-)
G90016 NA non-coding upstream 36754 10983692 ~ 10984883 (-)
G90028 NA non-coding upstream 114868 11061806 ~ 11124408 (-)
G90051 LOC107747284 non-coding upstream 202704 11149642 ~ 11150909 (-)
G90079 NA non-coding upstream 386762 11333700 ~ 11335867 (-)
LOC103045558 ensab,LOC103045558,LOC108441925,LOC108268136,LOC107741750,LOC107663348,LOC107587831,LOC107597988 other downstream 196967 10732935 ~ 10743717 (-)
vps72 vps72,LOC107571619 other downstream 245350 10682356 ~ 10695334 (-)
lysmd1 lysmd1 other downstream 281078 10655471 ~ 10659606 (-)
G89751 NA other downstream 716021 10223520 ~ 10224663 (-)
LOC103025178 LOC108429038 other downstream 897831 10011817 ~ 10042853 (-)
LOC103031398 dgat1b,LOC108436588,LOC108267870,LOC107741726,LOC107552801,LOC107671724,LOC107724797 other upstream 661533 11608471 ~ 11630001 (-)
LOC103024123 LOC108436541 other upstream 1215350 12162288 ~ 12169694 (-)
LOC103038102 iqgap3,LOC106605450,LOC105031059,LOC105908924 other upstream 1774031 12720969 ~ 12743217 (-)
G90571 mpp6,LOC108267518,LOC108436535,LOC107596657,LOC107749029 other upstream 2003674 12950612 ~ 12967291 (-)
LOC103029309 osbpl3,osbpl3b,LOC108441521,LOC107678127,LOC107550826,LOC107685532 other upstream 2075057 13021995 ~ 13135114 (-)

Expression


Co-expression Network