LOC103025323 (LOC108434880,LOC106593690)


Basic Information

Item Value
gene id LOC103025323
gene name LOC108434880,LOC106593690
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 22869102 ~ 22874060 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254531.3
ctctctctctcgtttctttCTCAacctgctctctctccctctctttctctctctctgttattctCTTTATTTCGCTCCGTGGACCCTGCCATGTCCTATCCACAGTTCGGATACCCCTACTCGTCTGCGCCACAGTTCCTCATGACCACCAGCTCTCTGACCTCTTGCTGCGAGTCGAGCTCCAGGTCCGTGCCGGACTCAGGCATGGCCACCTCGGCACAGCCCCCCGTCTACTGCCCCATGTACGAGAGCAGACTGCTGGCCACTGCCCGGCATGAGCTGGTCTACGGCAGCCCATACACCAGTGGTCAGGGCTACGGCAATTATGTTGCTTACGGCACAGACGCCTCTGCTTTTTATTCCCTGGGAGCCTTTGACACCAAGGATGGGACGGCTTCTGCGCATGCGGGGATCACCCAGGCTGCTACCTACTACCCCTATGACCCCACCCTGGGGCAGTACCAGTATGACAGATACGGCTCCATGGACGGAGGGACCAGGAGGAAAAATGCCACTCGAGAGACCACCAGCACGCTGAAGGCCTGGCTGCAGGAGCACAGGAAGAACCCCTATCCCACCAAGGGGGAGAAGATCATGCTGGCCATCATCACCAAGATGACCCTCACCCAGGTCTCCACGTGGTTTGCTAATGCCAGGAGAAGACTCAAGAAGGAGAATAAGATGACCTGGCCACCGAGGAACAAGTGCTCAGATGAGAAGAGATACGGAGAAGACGAGGAAGGCTCACAAGAGGATCAAATCAAGAGTGAAACAAATGATGACGAGAGCAGAAGTCGAGAAGATAAGGACCTTCAGCTGAGCGACCTGGACGACTTTGACGCCATCGAGTCGGAAAGCTCAGAGTGCGAGCTTAAGCATCAATTCCACATGAACGCACACCTGGCCTCCAGCGAGCACCTCAAGGACACTTCCATGAAACTGTCCATCGGACCCTCGCTGGAAGGGGACCGCGACCTGGCCAAGAGCTGCCTAAAAACAGTGACTGCTGAAGACCTGGAGCACGACCCAGGCGACATCAGGCAAACCAAAACCTGCTTCCAGCAAGGCCACCAGGTGCTGGACAGCAAACCTCGTATCTGGTCTCTGGCCCAGACCGCCACCTCGTTGAACCAGACAGAGTACCCGTCCTGCATGCTTAGATGCCAGCCAGCCATGGCCTCCTCCCCCGAGGCCTCGTCGCCCACCGGTGTCCTGGACAGGCAGCAGGACTCCCCGGTCACAACCCTCAGAAACTGGGTGGACGGGGTTTTTCACGACCCCCTGTTTAGACACAGCACTTTGAACCAGTCTCACACGAATACGTCAGTTTCTTGGACCACAACCAAAGGCTCCATCCTGGAGACGGGCGCACCAGAGCGCACGGTAGGAGGCAGTGGGATAAAAGGACACACCATTGCTTTGCAGCATCAAGAGCCCAATAAGGATAACATGGCCTTCCCCAAAGCAATTAACAAAATGTTTTGCTCTTAACCCTTTCTGATTCATTCAGAAGATAAGGAACAATAAAACTTGAAAAGAATGGGAAGAGTGGGAGTTAAGAACATGTTACAGTGACAGTTgatgaacaacaacaacaaaaaaaagaacattgaaCTGTTTGGATGggtgcgaaaaaaaaaaaagaagctaatggacagtttttttaaaactaaaaaatatatctatatatttgcTTGGTCATGGGGAATCGTATGTAGTAACTGTTCTATTGACATTTCACTTTCGATGGGATccgtttaataatatatatataaatatatatgtttatatatatatatttttttcccttctgcCTCTGTCAAACAGCGCACGTTAAatttatgtatatgtacaaCTTAAAGTTTACAGGTTTACGGTTTTGTttcctattatttatttatttcttcattttcgTTTGGCATGCATATGTTGGTAGTGGTCTTAATGGGACATTTTCGTTTCAAACTCGGTCATGAACTGGATGACTTGCGTGTCACtgttgaaacataaaaaaaaagaaaagacggaaaaaaaataataatctcacACAAGTAGCCTACACACAAGTTTCCTTCAGAGCTGGGGACTGTTCTAAATTTGTTCACCATAATAAAGGGTCGGTTTTT

Function

NR:

description
PREDICTED: iroquois-class homeodomain protein irx-4-like

GO: NA

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254531.3 True 2126 mRNA 0.49 5 22869102 22874060

Neighbor

gene id symbol gene type direction distance location
irx2 irx2 coding upstream 206565 22655833 ~ 22662537 (+)
tfpt tfpt,mrpl51 coding upstream 1093479 21770369 ~ 21775623 (+)
LOC103046806 LOC108410646,LOC106605752,LOC106577252,LOC105018995,LOC108264199 coding upstream 1101742 21747323 ~ 21767360 (+)
LOC103045162 si:dkey-283b15.4,cyth2,LOC108410633,LOC107559044,LOC107688991,LOC108268159 coding upstream 1148931 21703591 ~ 21720171 (+)
LOC103043132 sphk2,LOC103388269,LOC106605743,LOC106699615,LOC106577300,LOC103136634 coding upstream 1170952 21685541 ~ 21698150 (+)
LOC103025629 LOC108434887,LOC107701802,LOC108272386,LOC107758826 coding downstream 103852 22977912 ~ 23023100 (+)
slc6a3 slc6a3,LOC108272311,LOC107564665 coding downstream 166878 23040938 ~ 23066757 (+)
dcdc2 dcdc2 coding downstream 211511 23085571 ~ 23120098 (+)
dctn3 dctn3,LOC107726235,LOC107689028,LOC107569444,LOC107713912,LOC107559051 coding downstream 1355794 24229854 ~ 24234149 (+)
ttk ttk,LOC107569443,LOC107559022,LOC105908890,LOC105419921 coding downstream 1363064 24237124 ~ 24248401 (+)
G92721 NA non-coding upstream 55320 22813579 ~ 22813782 (+)
G92715 NA non-coding upstream 182353 22686421 ~ 22686749 (+)
G92708 NA non-coding upstream 267113 22601741 ~ 22601989 (+)
G92697 NA non-coding upstream 514785 22353936 ~ 22354317 (+)
LOC111193296 NA non-coding upstream 598584 22262527 ~ 22270518 (+)
G92735 NA non-coding downstream 25637 22899697 ~ 22900073 (+)
G92743 NA non-coding downstream 64179 22938239 ~ 22942207 (+)
G92792 nrsn1,LOC107730905,LOC107558647,LOC107758834 non-coding downstream 252190 23126250 ~ 23129788 (+)
G92794 NA non-coding downstream 263474 23137534 ~ 23137990 (+)
G92800 NA non-coding downstream 336392 23210452 ~ 23210794 (+)
G92462 ptprub,LOC107705793,LOC107588504 other upstream 1517099 21269165 ~ 21352003 (+)
G92350 sh3d21 other upstream 1923596 20941426 ~ 20945506 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other upstream 2008166 20839975 ~ 20860936 (+)
LOC103032252 LOC103032252,LOC108433590,LOC107755659,LOC107588526,LOC107700712,LOC107704880,LOC107705924 other upstream 2047712 20818927 ~ 20821390 (+)
grik3 grik3,LOC100334689,LOC105019312,LOC106605119 other upstream 2256818 20357549 ~ 20612284 (+)
G93079 NA other downstream 1824073 24698133 ~ 24708374 (+)
G93135 NA other downstream 2040629 24914689 ~ 24965444 (+)
G93185 LOC105900568,LOC101883708 other downstream 2437817 25311877 ~ 25313707 (+)
LOC103034726 LOC108436089 other downstream 3393433 26267493 ~ 26392435 (+)
G93753 NA other downstream 4074403 26948463 ~ 26948879 (+)

Expression


Co-expression Network