irx2 (irx2)


Basic Information

Item Value
gene id irx2
gene name irx2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 22655833 ~ 22662537 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254530.3
CTGGGCTGCGtatgcgtgcgtgtgtgtgtgtatttgtgcgtgtgtgtgcgtatgtttTTTCCCAtactgctctctctcctctccgcGTGTCCCATGCTCGCACCGCTGCGGCCCCGTTCcactcatcctcctcctcctcctcttcctccctccaTTCCACTCCATTCTCCTCCTTACTTTCTCGCCCTCATCTCCTCTCTTTACATGCGTTAGTGCGCACTCCACcttccttcctcctcctctttctttcttttttattatttttcctttctttttggctctctgtgttttttggaGTGAAGACCCATCTGTTCGTCTTGCCCCAGGATGTCTTACCCTCAGGGGTACCTGTACCAGTCCCCTGCCTCCCTGGCGCTGTACTCCTGCCCGGCGTACGGGGCTCAGGCTCTGGCGAGGAGCGATGACCTGCTCCGCTCCTCGTcttcctcgtcctcgtcctcctcTTCGTCCTCATCTTCCTgctcctcgtcctcctcctgctcctcctcggGGTCTGCCTTCAGTCCTTACCCCGGATCCGCCGCTTTCTCCAGCCCGCTGCCCTACTCCGCCGACCCGGCCAGCGCCTTCCCACCCTACATGggTTCCCCCTACGACCCCCACCCCGCGGGTCTGGCGGCAGCAGCAGGTGCCGTGGGATTTGCCCCCTACCCCGGGGCAGGTTACCCCTACCAGCTGAACGACCCCACGTACCGTAAGAACGCCACGCGCGACGCCACGGCAACGCTGAAGGCCTGGCTGCAGGAACACAGGAAGAACCCCTATCCCACCAAGGGGGAGAAGATCATGCTGGCCATCATCACCAAGATGACCCTCACCCAGGTCTCCACGTGGTTTGCTAATGCCAGGAGGAGACTCAAGAAGGAGAACAAAGTTACGTGGGCGCCAAGGAGCAAgagtgatgatgaggatgaagaaGATGGAGACGGCGAGAGGAAAGAGGAGCGAGCTGGGAAGAGTCTGGAAAACGAGGAAGCTTCTGCTGAGGACGAaggCATCAGTCTGCAGGTGGACAGCCTGACGGACCATTCTGTAGAGTCCGACGGCGAGAAGGTCACTTGCAGGATCAGTGATCTTGTCTGCAGCTCTGGACCTGATGCCAAGGACAAATGTGATGAGAATGATCTGGACGTTGGCCACGGAGAGCGGCGACAGGGTCTGTCACCCAAGCCAGTGACCTCTTCACCCCTGATGGGTGTGGAGGCTCCGCTCTTgggccaccaccaccaccaccaggaCTCCAGAAACAAAAGCAAGGCCTGCCTGGACAGTCGAACGGCCTCAGAAGGCCAGAGCCAGACAGTCAAGCCCAAGCTCTGGTCCTTGGCTGAGATCGCCACCTCGGACCCCAAGCAGCCCCTGGGGCAAAGCTGCCCCTCGGCTGTGGGTCTTCTAGCTTCTACGGCCTCCGGCACGTCTCCGGCCGCTCCTGTGTACTCGGCCTCTTCCATCCTGGGACGGCCGCTGTACTACACCTCGCCCTTTTACAGCAACTACACAAACTATGGGAGCTTCAGCCCTTTGCAGGGCCAAGGGATTCTGCGCTACGGCTCTACTGGAATGGCTGCTAATGAGGGACTTCCACAGACTGTGCTCAGTGCCAGCGCCATTCACAAACACACGTCCGAACACCTGCTAAAGTCTGCCCACAGTCAGACTGAGCAACACTTCAGGGCTTCGAATGTAGAGTCGAAGAAAGcagactCCCCAGATGTGTGCACAGTAGGACCTCAGTCTTACCtgtcaagctaaaaaaaaagggacGAGGAAGACCATTCAAGTAGGTGTCACAGTTGCTTTGAGCAAAGCGAACAAAGCCATCACCCCCACCAACCCCGTCCACACTGCTGGTCTTAAAAAAAGCCCACCAGCTTCTCCCCGAACCGGATTGCATTGAGAACTGCAGAGCACTTGACTAGATCTAAAACCATATGGCACTGCGACATGAGGAAACATGGAGGtgcatattcttttttttgttttgtttgcccCCCCCCTTTCCCCTCTCTGATGACTTGTGCATTTATGGATAAAGTAGTTATCTCACCATAAGGAAACTCTCTCTCAGGACCCCCTGTAGTTTGCTTCATTGCCATCATGTGTGGGACACGATTAGTCTCGACTTCATCTGTACTTTATTTGTAAAGGCTGTAAACTGGAGGAGGACGACATGTGGGGCTGGTAAACTCAACTAAGAGTGGAATacatttgatatttatttttgtataatgaCGGCAGTTGCCTATTAATTTATGCAAGTTGTATTGCAATGGAAAGCAGAAAACcttgttttgtaaataaattataattggtttttatttaaaaaaaacggcgagaaaaaatatacagaagTTACAAAATGTTGTTAAGGAGAATACTTTTACTAATTTATATCTTTCATTGTGAATAAAAGGTGCTGGTGTGCACTAGGAAACCTG
>XM_022673765.1
TCTGGGCTGCGtatgcgtgcgtgtgtgtgtgtatttgtgcgtgtgtgtgcgtatgtttTTTCCCAtactgctctctctcctctccgcGTGTCCCATGCTCGCACCGCTGCGGCCCCGTTCcactcatcctcctcctcctcctcttcctccctccaTTCCACTCCATTCTCCTCCTTACTTTCTCGCCCTCATCTCCTCTCTTTACATGCGTTAGTGCGCACTCCACcttccttcctcctcctctttctttcttttttattatttttcctttctttttggctctctgtgttttttggaGTGAAGACCCATCTGTTCGTCTTGCCCCAGGATGTCTTACCCTCAGGGGTACCTGTACCAGTCCCCTGCCTCCCTGGCGCTGTACTCCTGCCCGGCGTACGGGGCTCAGGCTCTGGCGAGGAGCGATGACCTGCTCCGCTCCTCGTcttcctcgtcctcgtcctcctcTTCGTCCTCATCTTCCTgctcctcgtcctcctcctgctcctcctcggGGTCTGCCTTCAGTCCTTACCCCGGATCCGCCGCTTTCTCCAGCCCGCTGCCCTACTCCGCCGACCCGGCCAGCGCCTTCCCACCCTACATGggTTCCCCCTACGACCCCCACCCCGCGGGTCTGGCGGCAGCAGCAGGTGCCGTGGGATTTGCCCCCTACCCCGGGGCAGGTTACCCCTACCAGCTGAACGACCCCACGTACCGTAAGAACGCCACGCGCGACGCCACGGCAACGCTGAAGGCCTGGCTGCAGGAACACAGGAAGAACCCCTATCCCACCAAGGGGGAGAAGATCATGCTGGCCATCATCACCAAGATGACCCTCACCCAGGTCTCCACGTGGTTTGCTAATGCCAGGAGGAGACTCAAGAAGGAGAACAAAGTTACGTGGGCGCCAAGGAGCAAgagtgatgatgaggatgaagaaGATGGAGACGGCGAGAGGAAAGAGGAGCGAGCTGGGAAGAGTCTGGAAAACGAGGAAGCTTCTGCTGAGGACGAaggCATCAGTCTGCAGGTGGACAGCCTGACGGACCATTCTGTAGAGTCCGACGGCGAGAAGGTCACTTGCAGGATCAGTGATCTTGTCTGCAGCTCTGGACCTGATGCCAAGGACAAATGTGATGAGAATGATCTGGACGTTGGCCACGGAGAGCGGCGACAGGGTCTGTCACCCAAGCCAGTGACCTCTTCACCCCTGATGGGTGTGGAGGCTCCGCTCTTgggccaccaccaccaccaccaggaCTCCAGAAACAAAAGCAAGGCCTGCCTGGACAGTCGAACGGCCTCAGAAGGCCAGAGCCAGACAGTCAAGCCCAAGCTCTGGTCCTTGGCTGAGATCGCCACCTCGGACCCCAAGCAGCCCCTGGGGCAAAGCTGCCCCTCGGCTGTGGGTCTTCTAGCTTCTACGGCCTCCGGCACGTCTCCGGCCGCTCCTGTGTACTCGGCCTCTTCCATCCTGGGACGGCCGCTGTACTACACCTCGCCCTTTTACAGCAACTACACAAACTATGGGAGCTTCAGCCCTTTGCAGGGCCAAGGGATTCTGCGCTACGGCTCTACTGGAATGGCTGCTAATGAGGGACTTCCACAGACTGTGCTCAGTGCCAGCGCCATTCACAAACACACGTCCGAACACCTGCTAAAGTCTGCCCACAGTCAGACTGAGCAACACTTCAGGGCTTCGAATGTAGAGTCGAAGAAAGactCCCCAGATGTGTGCACAGTAGGACCTCAGTCTTACCtgtcaagctaaaaaaaaagggacGAGGAAGACCATTCAAGTAGGTGTCACAGTTGCTTTGAGCAAAGCGAACAAAGCCATCACCCCCACCAACCCCGTCCACACTGCTGGTCTTAAAAAAAGCCCACCAGCTTCTCCCCGAACCGGATTGCATTGAGAACTGCAGAGCACTTGACTAGATCTAAAACCATATGGCACTGCGACATGAGGAAACATGGAGGtgcatattcttttttttgttttgtttgcccCCCCCCTTTCCCCTCTCTGATGACTTGTGCATTTATGGATAAAGTAGTTATCTCACCATAAGGAAACTCTCTCTCAGGACCCCCTGTAGTTTGCTTCATTGCCATCATGTGTGGGACACGATTAGTCTCGACTTCATCTGTACTTTATTTGTAAAGGCTGTAAACTGGAGGAGGACGACATGTGGGGCTGGTAAACTCAACTAAGAGTGGAATacatttgatatttatttttgtataatgaCGGCAGTTGCCTATTAATTTATGCAAGTTGTATTGCAATGGAAAGCAGAAAACcttgttttgtaaataaattataattggtttttatttaaaaaaaacggcgagaaaaaatatacagaagTTACAAAATGTTGTTAAGGAGAATACTTTTACTAATTTATATCTTTCATTGTGAATAAAAGGTGCTGGTGTGCACTAGGAAACCTG

Function

symbol description
irx2 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: iroquois-class homeodomain protein IRX-2 isoform X1

GO:

id name namespace
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254530.3 True 2459 mRNA 0.53 5 22655834 22662537
XM_022673765.1 False 2457 mRNA 0.53 5 22655833 22662537

Neighbor

gene id symbol gene type direction distance location
tfpt tfpt,mrpl51 coding upstream 880210 21770369 ~ 21775623 (+)
LOC103046806 LOC108410646,LOC106605752,LOC106577252,LOC105018995,LOC108264199 coding upstream 888473 21747323 ~ 21767360 (+)
LOC103045162 si:dkey-283b15.4,cyth2,LOC108410633,LOC107559044,LOC107688991,LOC108268159 coding upstream 935662 21703591 ~ 21720171 (+)
LOC103043132 sphk2,LOC103388269,LOC106605743,LOC106699615,LOC106577300,LOC103136634 coding upstream 957683 21685541 ~ 21698150 (+)
prpf31 prpf31 coding upstream 986506 21660270 ~ 21669327 (+)
LOC103025323 LOC108434880,LOC106593690 coding downstream 206565 22869102 ~ 22874060 (+)
LOC103025629 LOC108434887,LOC107701802,LOC108272386,LOC107758826 coding downstream 315375 22977912 ~ 23023100 (+)
slc6a3 slc6a3,LOC108272311,LOC107564665 coding downstream 378401 23040938 ~ 23066757 (+)
dcdc2 dcdc2 coding downstream 423034 23085571 ~ 23120098 (+)
dctn3 dctn3,LOC107726235,LOC107689028,LOC107569444,LOC107713912,LOC107559051 coding downstream 1567317 24229854 ~ 24234149 (+)
G92708 NA non-coding upstream 53844 22601741 ~ 22601989 (+)
G92697 NA non-coding upstream 301516 22353936 ~ 22354317 (+)
LOC111193296 NA non-coding upstream 385315 22262527 ~ 22270518 (+)
G92683 NA non-coding upstream 402602 22253019 ~ 22253231 (+)
G92669 NA non-coding upstream 548490 22107013 ~ 22107343 (+)
G92715 NA non-coding downstream 23884 22686421 ~ 22686749 (+)
G92721 NA non-coding downstream 151042 22813579 ~ 22813782 (+)
G92735 NA non-coding downstream 237160 22899697 ~ 22900073 (+)
G92743 NA non-coding downstream 275702 22938239 ~ 22942207 (+)
G92792 nrsn1,LOC107730905,LOC107558647,LOC107758834 non-coding downstream 463713 23126250 ~ 23129788 (+)
G92462 ptprub,LOC107705793,LOC107588504 other upstream 1303830 21269165 ~ 21352003 (+)
G92350 sh3d21 other upstream 1710327 20941426 ~ 20945506 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other upstream 1794897 20839975 ~ 20860936 (+)
LOC103032252 LOC103032252,LOC108433590,LOC107755659,LOC107588526,LOC107700712,LOC107704880,LOC107705924 other upstream 1834443 20818927 ~ 20821390 (+)
grik3 grik3,LOC100334689,LOC105019312,LOC106605119 other upstream 2043549 20357549 ~ 20612284 (+)
G93079 NA other downstream 2035596 24698133 ~ 24708374 (+)
G93135 NA other downstream 2252152 24914689 ~ 24965444 (+)
G93185 LOC105900568,LOC101883708 other downstream 2649340 25311877 ~ 25313707 (+)
LOC103034726 LOC108436089 other downstream 3604956 26267493 ~ 26392435 (+)
G93753 NA other downstream 4285926 26948463 ~ 26948879 (+)

Expression


Co-expression Network