RNA id: XM_022673765.1


Basic Information

Item Value
RNA id XM_022673765.1
length 2457
RNA type mRNA
GC content 0.53
exon number 5
gene id irx2
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 22655833 ~ 22662537 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGGGCTGCGtatgcgtgcgtgtgtgtgtgtatttgtgcgtgtgtgtgcgtatgtttTTTCCCAtactgctctctctcctctccgcGTGTCCCATGCTCGCACCGCTGCGGCCCCGTTCcactcatcctcctcctcctcctcttcctccctccaTTCCACTCCATTCTCCTCCTTACTTTCTCGCCCTCATCTCCTCTCTTTACATGCGTTAGTGCGCACTCCACcttccttcctcctcctctttctttcttttttattatttttcctttctttttggctctctgtgttttttggaGTGAAGACCCATCTGTTCGTCTTGCCCCAGGATGTCTTACCCTCAGGGGTACCTGTACCAGTCCCCTGCCTCCCTGGCGCTGTACTCCTGCCCGGCGTACGGGGCTCAGGCTCTGGCGAGGAGCGATGACCTGCTCCGCTCCTCGTcttcctcgtcctcgtcctcctcTTCGTCCTCATCTTCCTgctcctcgtcctcctcctgctcctcctcggGGTCTGCCTTCAGTCCTTACCCCGGATCCGCCGCTTTCTCCAGCCCGCTGCCCTACTCCGCCGACCCGGCCAGCGCCTTCCCACCCTACATGggTTCCCCCTACGACCCCCACCCCGCGGGTCTGGCGGCAGCAGCAGGTGCCGTGGGATTTGCCCCCTACCCCGGGGCAGGTTACCCCTACCAGCTGAACGACCCCACGTACCGTAAGAACGCCACGCGCGACGCCACGGCAACGCTGAAGGCCTGGCTGCAGGAACACAGGAAGAACCCCTATCCCACCAAGGGGGAGAAGATCATGCTGGCCATCATCACCAAGATGACCCTCACCCAGGTCTCCACGTGGTTTGCTAATGCCAGGAGGAGACTCAAGAAGGAGAACAAAGTTACGTGGGCGCCAAGGAGCAAgagtgatgatgaggatgaagaaGATGGAGACGGCGAGAGGAAAGAGGAGCGAGCTGGGAAGAGTCTGGAAAACGAGGAAGCTTCTGCTGAGGACGAaggCATCAGTCTGCAGGTGGACAGCCTGACGGACCATTCTGTAGAGTCCGACGGCGAGAAGGTCACTTGCAGGATCAGTGATCTTGTCTGCAGCTCTGGACCTGATGCCAAGGACAAATGTGATGAGAATGATCTGGACGTTGGCCACGGAGAGCGGCGACAGGGTCTGTCACCCAAGCCAGTGACCTCTTCACCCCTGATGGGTGTGGAGGCTCCGCTCTTgggccaccaccaccaccaccaggaCTCCAGAAACAAAAGCAAGGCCTGCCTGGACAGTCGAACGGCCTCAGAAGGCCAGAGCCAGACAGTCAAGCCCAAGCTCTGGTCCTTGGCTGAGATCGCCACCTCGGACCCCAAGCAGCCCCTGGGGCAAAGCTGCCCCTCGGCTGTGGGTCTTCTAGCTTCTACGGCCTCCGGCACGTCTCCGGCCGCTCCTGTGTACTCGGCCTCTTCCATCCTGGGACGGCCGCTGTACTACACCTCGCCCTTTTACAGCAACTACACAAACTATGGGAGCTTCAGCCCTTTGCAGGGCCAAGGGATTCTGCGCTACGGCTCTACTGGAATGGCTGCTAATGAGGGACTTCCACAGACTGTGCTCAGTGCCAGCGCCATTCACAAACACACGTCCGAACACCTGCTAAAGTCTGCCCACAGTCAGACTGAGCAACACTTCAGGGCTTCGAATGTAGAGTCGAAGAAAGactCCCCAGATGTGTGCACAGTAGGACCTCAGTCTTACCtgtcaagctaaaaaaaaagggacGAGGAAGACCATTCAAGTAGGTGTCACAGTTGCTTTGAGCAAAGCGAACAAAGCCATCACCCCCACCAACCCCGTCCACACTGCTGGTCTTAAAAAAAGCCCACCAGCTTCTCCCCGAACCGGATTGCATTGAGAACTGCAGAGCACTTGACTAGATCTAAAACCATATGGCACTGCGACATGAGGAAACATGGAGGtgcatattcttttttttgttttgtttgcccCCCCCCTTTCCCCTCTCTGATGACTTGTGCATTTATGGATAAAGTAGTTATCTCACCATAAGGAAACTCTCTCTCAGGACCCCCTGTAGTTTGCTTCATTGCCATCATGTGTGGGACACGATTAGTCTCGACTTCATCTGTACTTTATTTGTAAAGGCTGTAAACTGGAGGAGGACGACATGTGGGGCTGGTAAACTCAACTAAGAGTGGAATacatttgatatttatttttgtataatgaCGGCAGTTGCCTATTAATTTATGCAAGTTGTATTGCAATGGAAAGCAGAAAACcttgttttgtaaataaattataattggtttttatttaaaaaaaacggcgagaaaaaatatacagaagTTACAAAATGTTGTTAAGGAGAATACTTTTACTAATTTATATCTTTCATTGTGAATAAAAGGTGCTGGTGTGCACTAGGAAACCTG

Function

GO:

id name namespace
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124673 lncRNA upstream 53844 22601741 ~ 22601989 (+) True G92708
TU124662 lncRNA upstream 301516 22353936 ~ 22354317 (+) True G92697
TU124649 lncRNA upstream 385315 22263425 ~ 22270518 (+) False LOC111193296
TU124643 lncRNA upstream 385584 22262609 ~ 22270249 (+) False LOC111193296
TU124644 lncRNA upstream 385584 22262609 ~ 22270249 (+) False LOC111193296
TU124680 lncRNA downstream 23884 22686421 ~ 22686749 (+) True G92715
TU124689 lncRNA downstream 151042 22813579 ~ 22813782 (+) True G92721
TU124704 lncRNA downstream 237160 22899697 ~ 22900073 (+) True G92735
TU124712 lncRNA downstream 275702 22938239 ~ 22942207 (+) True G92743
TU124774 lncRNA downstream 463713 23126250 ~ 23129788 (+) True G92792
XM_007254513.3 mRNA upstream 880210 21770369 ~ 21775623 (+) True tfpt
XM_007254516.3 mRNA upstream 888473 21747323 ~ 21767360 (+) True LOC103046806
XM_022673757.1 mRNA upstream 935662 21703591 ~ 21720171 (+) True LOC103045162
XM_007254503.3 mRNA upstream 957683 21685541 ~ 21698150 (+) False LOC103043132
XM_007254531.3 mRNA downstream 206565 22869102 ~ 22874060 (+) True LOC103025323
XM_007254532.3 mRNA downstream 315375 22977912 ~ 23023100 (+) True LOC103025629
XM_007254533.3 mRNA downstream 378401 23040938 ~ 23066260 (+) False slc6a3
XM_022673767.1 mRNA downstream 379687 23042224 ~ 23066757 (+) True slc6a3
XM_007254534.2 mRNA downstream 423034 23085571 ~ 23120098 (+) True dcdc2
TU124348 other upstream 1303830 21269165 ~ 21352003 (+) True G92462
TU124346 other upstream 1303830 21275163 ~ 21352003 (+) False G92462
TU124347 other upstream 1303830 21275163 ~ 21352003 (+) False G92462
TU124179 other upstream 1710327 20941426 ~ 20945506 (+) True G92350
TU124129 other upstream 1834443 20819150 ~ 20821390 (+) False LOC103032252
TU125154 other downstream 2035596 24698133 ~ 24708374 (+) True G93079
TU125228 other downstream 2252152 24914689 ~ 24965444 (+) True G93135
TU125312 other downstream 2649340 25311877 ~ 25313707 (+) True G93185
TU126114 other downstream 4285926 26948463 ~ 26948879 (+) True G93753
TU126349 other downstream 5257057 27919594 ~ 27939020 (+) False LOC111193309

Expression Profile