RNA id: TU124649


Basic Information

Item Value
RNA id TU124649
length 392
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id LOC111193296
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 22262527 ~ 22270518 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAAGTGAATGCTATTTGTATAGTACTGGAGTGGTGTGTAGTCACTGAACTTTGGATTTGTAGTTGAAAGTATCACTATCTaccatttattattttgatttctCTTACTGATTTGCAGTGTTCCcttattttgtttactttatgtAATAGCATACAAACCCTAACTAGAAGCCTGAAGCGTAGTTGTGGTATATGTCCTATTTTGTTACCAAAGGTTTGtttgttatcttttttttttttcattttaataaaatctttTACCGTGTCAGTTAACCTGTGACCAAATAaagaatatttctatttttcttaaaaGTGACCTGTGTGCATTTTTACTTACAGAGCTCCCCTTTGCTCTAGGTATAAACCAAGGGGTGGCgtagttggtttagttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124641 lncRNA upstream 10194 22253019 ~ 22253231 (+) True G92683
TU124627 lncRNA upstream 156082 22107013 ~ 22107343 (+) True G92669
TU124595 lncRNA upstream 171538 22091578 ~ 22091887 (+) True G92648
TU124594 lncRNA upstream 177883 22085210 ~ 22085542 (+) True G92647
TU124592 lncRNA upstream 195429 22067641 ~ 22067996 (+) True G92645
TU124662 lncRNA downstream 83418 22353936 ~ 22354317 (+) True G92697
TU124673 lncRNA downstream 331223 22601741 ~ 22601989 (+) True G92708
TU124680 lncRNA downstream 415903 22686421 ~ 22686749 (+) True G92715
TU124689 lncRNA downstream 543061 22813579 ~ 22813782 (+) True G92721
TU124704 lncRNA downstream 629179 22899697 ~ 22900073 (+) True G92735
XM_007254513.3 mRNA upstream 487802 21770369 ~ 21775623 (+) True tfpt
XM_007254516.3 mRNA upstream 496065 21747323 ~ 21767360 (+) True LOC103046806
XM_022673757.1 mRNA upstream 543254 21703591 ~ 21720171 (+) True LOC103045162
XM_022673755.1 mRNA upstream 565275 21686025 ~ 21698150 (+) True LOC103043132
XM_022673765.1 mRNA downstream 385315 22655833 ~ 22662537 (+) False irx2
XM_007254530.3 mRNA downstream 385316 22655834 ~ 22662537 (+) True irx2
XM_007254531.3 mRNA downstream 598584 22869102 ~ 22874060 (+) True LOC103025323
XM_007254532.3 mRNA downstream 707394 22977912 ~ 23023100 (+) True LOC103025629
XM_007254533.3 mRNA downstream 770420 23040938 ~ 23066260 (+) False slc6a3
TU124348 other upstream 911422 21269165 ~ 21352003 (+) True G92462
TU124346 other upstream 911422 21275163 ~ 21352003 (+) False G92462
TU124347 other upstream 911422 21275163 ~ 21352003 (+) False G92462
TU124179 other upstream 1317919 20941426 ~ 20945506 (+) True G92350
TU124129 other upstream 1442035 20819150 ~ 20821390 (+) False LOC103032252
TU125154 other downstream 2427615 24698133 ~ 24708374 (+) True G93079
TU125228 other downstream 2644171 24914689 ~ 24965444 (+) True G93135
TU125312 other downstream 3041359 25311877 ~ 25313707 (+) True G93185
TU126114 other downstream 4677945 26948463 ~ 26948879 (+) True G93753
TU126349 other downstream 5649076 27919594 ~ 27939020 (+) False LOC111193309

Expression Profile