RNA id: XM_007254533.3


Basic Information

Item Value
RNA id XM_007254533.3
length 2566
RNA type mRNA
GC content 0.50
exon number 15
gene id slc6a3
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 23040938 ~ 23066757 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCTGGACCACACTGTTTAGTGGAGAGCACCCTCTCTTCAGCTGCGCTCTGCGTTCAATGCCAAGAATTTGGTTGTAGGTTTCTGGAAATGGCTAATTTTACCTTCCAGATCAACAATCAGCAAACATACATGgagaattaattttatttacattgttttacaCACCTGGACAATTTTCCTTTTATAATTCTGCTGAAGttggttggttggttttagAGAGGCTGTTGAACCCTCTGCAGGAGGCACCGTCTCCGCCCTGCCGTCTCCCAAACCCCAGGCCAGCACCCCATGCTCAGAGGCAGACTGCCGGCCGCACACATGTCCTCCGTCATCGCACCCGCCAAGCCCTCCAGCAGCATGGGCCCTAAAGAGGTGGAGCTGATCCTGGTAAAGGAGCAGAACGGGGTGCAGTTCACCTCCTCCGCCCTGGTCACCTCCACCGGCCAGACTCACCCGTCCGGCGAGCAGCGCGAGACCTGGGGCAAGAAGATCGACTTCCTGCTGTCCGTCATCGGCTTCGCTGTGGACCTGGCTAACGTGTGGAGGTTCCCCTACCTCTGCTACAAGAACGGTGGAGGTGCCTTCCTGGTGCCCTATCTTCTGTTCATGGTGATTGCTGGAATGCCGCTGTTCTACATGGAATTAGCTCTGGGTCAGTATAACCGGGAAGGAGCTGCGGGAGTCTGGAAGATCTGTCCGGTCTTTAAAGGTGTGGGCTTCACAGTGATCCTCATTTCTCTCTACGTGGGTTTCTACTATAACGTGATCATCGCCTGGGCTCTGTTCtacctcttctcctccttctcggGCGAGCTGCCCTGGGTCAACTGCAACAACACCTGGAACAGCGCCAACTGTTCCGACCTGAACGCCACCTTACTGAACGATTCCCACAAGGTCACCCCCGCCTTGGAGTACTTTGAGCGTGGGGTGCTGCATATGCAGGACAGCAGGGGGATTGATGATCTAGGTTTGCCGCGGTGGCAGCTCACTTGCTGCCTGGCCGTGGTCATCGTGGTTCTCTACTTCAGCCTCTGGAAGGGAGTCAAAACCTCCGGGAAGgtggtgTGGATCACTGCGACCATGCCCTATGTAGTCCTGACTGTTCTGCTGCTCCGTGGTGTCACCCTGCCTGGAGCCATCGATGGCATTAAAGCATACCTGAGTGTGGACTTCCTTCGTCTGTGTGATgctcagGTTTGGATCGAGGCTGCCACGCAGATATGCTTCTCTTTAGGAGTGGGGTTTGGTGTGCTAATCGCCTTCTCCAGCTACAACAAATTTAGCAACAACTGCTACAGAGATGCCATCATCACCAGCTCCATCAACTCCctcacaagttttttttctggcttTGTCATCTTCTCGTTCTTGGGCTACATGTCTCAGAAACACAACGTGGCCCTCGATAAAGTAGctactgatgGTCCAGGACTGGTGTTTATCATTTACCCTGAAGCCATAGCCACACTGCCGGGCTCCTCTGTTTGGGCTGTCATTTTCTTCATCATGCTGCTCACACTGGGAATCGACAGTGCGATGGGTGGTATGGAGTCGGTGATCACGGGACTCATTGATGAATTCAAGTTCctgcacagacacagagagctCTTCACACTCTTCATTGTGGTCTTGACTTTTCTAATCTCCCTCTTCTGCGTCACTAATGGAGGCATCTACGTGTTTACTTTGCTGGACCACTTTGCAGCAGGAACATCGATTCTCTTTGGAGTGCTGATTGAAGCCATTGGCATCGCTTGGTTTTACGGAGTGGACCGTTTTAGTGATGACATCCAGGAAATGATCGGTCATCGGCCAGGATTGTACTGGAGACTCTGCTGGAAGTTTGTCAGTCCCTGTTTCCTCCTGTTCATGGTGGTTGTCAGCTTTGCAACATTTAACCCTCCGAAGTACGGATCCTACTATTTTCCGACTTGGGCCAACATGGTTGGCTGGTGTTTGTCCATCTCCTCCATGATCATGGTGCCGCTTTACGCCATCTACAAGTTCTGCACCCTGCCAGGAAGCTTCTGTGCTAAACTGGCGTACGCCATCACCCCAGAGACAGAGCACCACTTGGTGGAGCGTGGGGAGGTGCGGCAGTTCACGcttCATCACTGGCTGGTGGTCTGAGTGCAGCACCGTTCTCTGAAAGTGAAGAAACTCTGCCAGCTCTGATGGGGTCAGGCTGCTGTGTGCCAAACAAACCGTAAATCTAGTCGTTTCTTTCTTGCGTAATTGAACATGTGGTTGTAACGTGATTTCTCGATCACAACATGATTGACATTCTGTCAATATCAGTTTAAATCTCAGTATAAAATGACTGTTACGATGGCTGATGTTGTCTCCCGatgactgtttattgtttactgaattttacttttttgtgaTTAGAGTACAACCGAGCCTTACTGATCAATGTGATTGAAGTGATGAAGCTATATACTGAATACGAATCTAGAATACACATAAATGCTTAACTAGTGATATTACATgacacacacatgtgcacacagAAATATGTATGTAGGCCTATAATCTTCTGTGTTAGAAAAAGGTGAAATT

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124712 lncRNA upstream 98731 22938239 ~ 22942207 (+) True G92743
TU124704 lncRNA upstream 140865 22899697 ~ 22900073 (+) True G92735
TU124689 lncRNA upstream 227156 22813579 ~ 22813782 (+) True G92721
TU124680 lncRNA upstream 354189 22686421 ~ 22686749 (+) True G92715
TU124673 lncRNA upstream 438949 22601741 ~ 22601989 (+) True G92708
TU124774 lncRNA downstream 59990 23126250 ~ 23129788 (+) True G92792
TU124776 lncRNA downstream 71274 23137534 ~ 23137990 (+) True G92794
TU124782 lncRNA downstream 144192 23210452 ~ 23210794 (+) True G92800
XR_002650415.1 lncRNA downstream 246815 23313075 ~ 23314198 (+) True LOC111193297
TU124796 lncRNA downstream 303964 23370224 ~ 23370819 (+) True G92814
XM_007254532.3 mRNA upstream 17838 22977912 ~ 23023100 (+) True LOC103025629
XM_007254531.3 mRNA upstream 166878 22869102 ~ 22874060 (+) True LOC103025323
XM_022673765.1 mRNA upstream 378401 22655833 ~ 22662537 (+) False irx2
XM_007254530.3 mRNA upstream 378401 22655834 ~ 22662537 (+) True irx2
XM_007254513.3 mRNA upstream 1265315 21770369 ~ 21775623 (+) True tfpt
XM_007254534.2 mRNA downstream 19311 23085571 ~ 23120098 (+) True dcdc2
XM_015607873.2 mRNA downstream 1163594 24229854 ~ 24234149 (+) False dctn3
XM_007257263.3 mRNA downstream 1163603 24229863 ~ 24234149 (+) True dctn3
XM_007257265.3 mRNA downstream 1170864 24237124 ~ 24248401 (+) True ttk
XM_007257266.3 mRNA downstream 1183994 24250254 ~ 24310553 (+) True bckdhb
TU124348 other upstream 1688935 21269165 ~ 21352003 (+) True G92462
TU124346 other upstream 1688935 21275163 ~ 21352003 (+) False G92462
TU124347 other upstream 1688935 21275163 ~ 21352003 (+) False G92462
TU124179 other upstream 2095432 20941426 ~ 20945506 (+) True G92350
TU124129 other upstream 2219548 20819150 ~ 20821390 (+) False LOC103032252
TU125154 other downstream 1631873 24698133 ~ 24708374 (+) True G93079
TU125228 other downstream 1848429 24914689 ~ 24965444 (+) True G93135
TU125312 other downstream 2245617 25311877 ~ 25313707 (+) True G93185
TU126114 other downstream 3882203 26948463 ~ 26948879 (+) True G93753
TU126349 other downstream 4853334 27919594 ~ 27939020 (+) False LOC111193309

Expression Profile