bckdhb (bckdhb,LOC102789113)


Basic Information

Item Value
gene id bckdhb
gene name bckdhb,LOC102789113
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 24250254 ~ 24310553 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257266.3
TCCGCTGACGTTTCGAGCGAAGTTccggtgtagtgtgtgtgtgtatgatggcGGCAGTGCGGCTTCTCCTCCGGACTGTGAGCTCCGCGTCCTCCTGTGCGCACAGCGGCTCAGGGACAGCGCTGCTCAGATTCTCCCCGACCTGCAGCTCCAGACCCAGAGCGCAGAGGCGGCATGCAGCTCATTTCGCCTTCCACCCAGACCCCGTCCCCACTAAATACGGCCCCACCGTGAAGATGAACTTGTTCCAGTCTATAACCAGTGCCTTGGATAACACACTTGCAAGTGACCCCACAGCAGTGATTTTTGGAGAGGACGTTGCCTTTGGTGGAGTTTTTCGATGTACTGTTGGACTTCGGGACAAATATGGAAAAGACCGGGTGTTCAATACCCCGCTGTGTGAACAGGGCATAGTGGGATTTGGAATAGGTGTAGCTGTTGCAGGTGCAACTGCCATTGCAGAGATTCAGTTTGCTGACTACATCTTTCCAGCTTTCGATCAGATTGTAAATGAGGCTGCTAAGTACCGGTACCGCTCGGGCAACCTTTATGACTGTGGGAACTTGACCATCCGAGCGCCATGGGGATGTGTGGGTCATGGCTCTCTCTACCACTCACAGAGCCCAGAGGCTTACTTCGCTCACTGCCCCGGCCTTAAGGTTGTTGTGCCTAGAGGTCCAGTTCAGGCTAAGGGGCTGCTGCTGTCCTGCATTGCTGATGAAAACCCCTGCATCTTCTTTGAGCCCAAGATTCTGTACAGAGCAGCAGtggAGCAGGTCCCCACCGAACCGTACCACCTCCCCCTGTCGCAGGCCGAGGTCGTGCAGGAGGGAAGTGACGTCACGCTGGTTGCCTGGGGAACACAGGTCCACGTAATGAGGGAGGTTGCTACCATGGCACAGGAGAAGCTTGGAGTGTCTTGTGAGGTCATTGACCTGCAGACTATTTTGCCATGGGATATAGAGACTGTATGCAAGTCGGTGGTGAAGACGGGGAGGCTGCTGATCAGTCATGAAGCTCCAGTGACCGGAGGCTTCGCTGCAGAGATCAGCTCTTCTATACAGgaaCAATGTTTCCTAAACCTAGAGGCACCCATCGCCAGGGTTTGTGGGTATGACACACCATTCCCTCACATTTTCGAGCCCTTCTACATCCCAGACAAGTGGAAGTGTTTTGAAGCAGTGAAAAGAATGATCAACTACTGATACCAGAATTGACAGGAAGACATGGGCACAGAGGTTCTGGCCTCGTTGACTGACAGACTGTTACGTGTGCGGTTTTTAAACATGGACTGTAACTCCAGAATTTCTACGGTCCACGCTGTGGAGCACCAGCCATGAACACTAATGCAGCAAATATCTAGTGGGTGCTCTGCTGTTGTAGTTAGCAAAATGaatgtttctgtttttgctgTTAACCGTGTGATCTATTTTTGTTGATCTcctgttttattaattattcagtggTGTTTTCTGTGGGAATTAAAGGGATTGTTCATGCTGTTGTACAGTGATTCCTCCACTCCTTCCCTTACTATCCCTTGTGAGGTGAACAGTGTCTGAACAGTGTCTTCAAATATCTGATCTAAGGCAGTTTTGCACCAATCCATTAACAGTGTAGTGTAAAATAAGACATTTCATTCTCCCATCAAACAAACTGTAAAGCTTGATTAAAATGATTTCGTTGTATATTGA

Function

symbol description
bckdhb Predicted to enable catalytic activity. Predicted to be involved in branched-chain amino acid catabolic process and response to nutrient. Predicted to be part of mitochondrial alpha-ketoglutarate dehydrogenase complex. Human ortholog(s) of this gene implicated in maple syrup urine disease. Orthologous to human BCKDHB (branched chain keto acid dehydrogenase E1 subunit beta).

NR:

description
PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00167 BCKDHB, bkdA2; 2-oxoisovalerate dehydrogenase E1 component beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257266.3 True 1694 mRNA 0.50 11 24250254 24310553

Neighbor

gene id symbol gene type direction distance location
ttk ttk,LOC107569443,LOC107559022,LOC105908890,LOC105419921 coding upstream 1853 24237124 ~ 24248401 (+)
dctn3 dctn3,LOC107726235,LOC107689028,LOC107569444,LOC107713912,LOC107559051 coding upstream 16105 24229854 ~ 24234149 (+)
dcdc2 dcdc2 coding upstream 1130156 23085571 ~ 23120098 (+)
slc6a3 slc6a3,LOC108272311,LOC107564665 coding upstream 1183497 23040938 ~ 23066757 (+)
LOC103025629 LOC108434887,LOC107701802,LOC108272386,LOC107758826 coding upstream 1227154 22977912 ~ 23023100 (+)
tpbg NA coding downstream 127447 24438000 ~ 24441139 (+)
LOC103043665 NA coding downstream 520993 24831546 ~ 24837635 (+)
LOC103044355 NA coding downstream 538444 24848997 ~ 24861508 (+)
LOC103044674 LOC108443657 coding downstream 551532 24862085 ~ 24878057 (+)
LOC103046305 NA coding downstream 579401 24889954 ~ 24894549 (+)
G92952 NA non-coding upstream 42283 24207689 ~ 24207971 (+)
G92929 echdc1 non-coding upstream 81178 24168663 ~ 24169076 (+)
G92848 NA non-coding upstream 315690 23859359 ~ 23934564 (+)
LOC111193350 NA non-coding upstream 563279 23682904 ~ 23686975 (+)
LOC111193349 NA non-coding upstream 661801 23586522 ~ 23588453 (+)
G92973 NA non-coding downstream 12107 24322660 ~ 24322874 (+)
G92977 NA non-coding downstream 64114 24374667 ~ 24410930 (+)
LOC111193351 NA non-coding downstream 122344 24432897 ~ 24447351 (+)
G93034 NA non-coding downstream 172414 24482967 ~ 24483312 (+)
LOC111193352 NA non-coding downstream 199602 24510155 ~ 24537540 (+)
G92462 ptprub,LOC107705793,LOC107588504 other upstream 2898251 21269165 ~ 21352003 (+)
G92350 sh3d21 other upstream 3304748 20941426 ~ 20945506 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other upstream 3389318 20839975 ~ 20860936 (+)
LOC103032252 LOC103032252,LOC108433590,LOC107755659,LOC107588526,LOC107700712,LOC107704880,LOC107705924 other upstream 3428864 20818927 ~ 20821390 (+)
grik3 grik3,LOC100334689,LOC105019312,LOC106605119 other upstream 3637970 20357549 ~ 20612284 (+)
G93079 NA other downstream 387580 24698133 ~ 24708374 (+)
G93135 NA other downstream 604136 24914689 ~ 24965444 (+)
G93185 LOC105900568,LOC101883708 other downstream 1001324 25311877 ~ 25313707 (+)
LOC103034726 LOC108436089 other downstream 1956940 26267493 ~ 26392435 (+)
G93753 NA other downstream 2637910 26948463 ~ 26948879 (+)

Expression


Co-expression Network