LOC111193350


Basic Information

Item Value
gene id LOC111193350
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 23682904 ~ 23686975 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650467.1
AGTGGAATCCGGAGAGGCATGGAAGCCATTCTGACATGAATCCTTTAATTCCTATGGaaagaagaaacagagagaacagaaagATGTCCTGATGTTGCCCAGCCCGGCTCACCACTGCCCTGCTGCCGCTGTGATGCAGGCCTGTTCTGGGACTCTGCACTAAACAATTCGTCCACTCCATAGCTGTACGTACAGCTGTTTAACCTGCATGGACTTTAACAATGACACTGAACACGTGTTTGATACACATTCACTTTCTCATAATTCAGTCCCTGTTGCTACTTTCATCTCTAACCATAAGAGTCTTGGATCTTTAtctttgtaaagctgctttgtgacattttttttgtaaaaagctCTATATAGATACAACTCAATTGGTGAAAATGATATAGCTAATATAGATGGTtgttcactctgtgtgtaagcTGCTAAAGTTTGTCCTTCTTCCAGAATCCAGACCTAAATGGGGCTATATGGATGTGGCAACCCTTGCCTTCTTGTCCTATAGGTTTCCTGCTGTAACACATCAAGTTCGCCTCAGCGAGGGATCGTCAGTTTATTTATCAGGTGCACTGGAATGCCTACAGAGCATTGGTACTTCAGCACAGgaattcaaattaaatatttttaacgcA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650467.1 True 638 lncRNA 0.42 2 23682904 23686975

Neighbor

gene id symbol gene type direction distance location
dcdc2 dcdc2 coding upstream 562806 23085571 ~ 23120098 (+)
slc6a3 slc6a3,LOC108272311,LOC107564665 coding upstream 616147 23040938 ~ 23066757 (+)
LOC103025629 LOC108434887,LOC107701802,LOC108272386,LOC107758826 coding upstream 659804 22977912 ~ 23023100 (+)
LOC103025323 LOC108434880,LOC106593690 coding upstream 808844 22869102 ~ 22874060 (+)
irx2 irx2 coding upstream 1020367 22655833 ~ 22662537 (+)
dctn3 dctn3,LOC107726235,LOC107689028,LOC107569444,LOC107713912,LOC107559051 coding downstream 542879 24229854 ~ 24234149 (+)
ttk ttk,LOC107569443,LOC107559022,LOC105908890,LOC105419921 coding downstream 550149 24237124 ~ 24248401 (+)
bckdhb bckdhb,LOC102789113 coding downstream 563279 24250254 ~ 24310553 (+)
tpbg NA coding downstream 751025 24438000 ~ 24441139 (+)
LOC103043665 NA coding downstream 1144571 24831546 ~ 24837635 (+)
LOC111193348 NA non-coding upstream 558 23568622 ~ 23682346 (+)
LOC111193349 NA non-coding upstream 94451 23586522 ~ 23588453 (+)
G92823 NA non-coding upstream 220850 23461603 ~ 23462054 (+)
G92822 NA non-coding upstream 290471 23392092 ~ 23392433 (+)
G92818 NA non-coding upstream 294999 23384445 ~ 23387905 (+)
G92848 NA non-coding downstream 172384 23859359 ~ 23934564 (+)
G92929 echdc1 non-coding downstream 481688 24168663 ~ 24169076 (+)
G92952 NA non-coding downstream 520714 24207689 ~ 24207971 (+)
G92973 NA non-coding downstream 635685 24322660 ~ 24322874 (+)
G92977 NA non-coding downstream 687692 24374667 ~ 24410930 (+)
G92462 ptprub,LOC107705793,LOC107588504 other upstream 2330901 21269165 ~ 21352003 (+)
G92350 sh3d21 other upstream 2737398 20941426 ~ 20945506 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other upstream 2821968 20839975 ~ 20860936 (+)
LOC103032252 LOC103032252,LOC108433590,LOC107755659,LOC107588526,LOC107700712,LOC107704880,LOC107705924 other upstream 2861514 20818927 ~ 20821390 (+)
grik3 grik3,LOC100334689,LOC105019312,LOC106605119 other upstream 3070620 20357549 ~ 20612284 (+)
G93079 NA other downstream 1011158 24698133 ~ 24708374 (+)
G93135 NA other downstream 1227714 24914689 ~ 24965444 (+)
G93185 LOC105900568,LOC101883708 other downstream 1624902 25311877 ~ 25313707 (+)
LOC103034726 LOC108436089 other downstream 2580518 26267493 ~ 26392435 (+)
G93753 NA other downstream 3261488 26948463 ~ 26948879 (+)

Expression


Co-expression Network