RNA id: TU124346


Basic Information

Item Value
RNA id TU124346
length 485
RNA type TUCP
GC content 0.56
exon number 2
gene id G92462
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 21269165 ~ 21352003 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAACTGTTTACCCTGACGTCAGTCCGCACGGCTCGCAGCTTCTCCCTCACTTCTGTCCTCTCCCAACTCCGCTCCGCCCGGGATTCCGGGGACCGATGGACTTGGAGTCCATAAGCTACCCTAACTACCTGGAGCCACTGACATGATCCCCGTCTGTTTTTCCCAGACTGGACTAAACGCGTAACATGAATACCTGCGCCATTCTTCTGCTCCTGGCTGTTCAGATTCGCGCCGACAGTGTCGAGGGACCAACAGCAGGCTGTACTTTTGATGAAGACTCCGACCCCAGCCTGTGTGAGTTCAGccagggagaggaggatgatTTTGATTGGCAGCTGTTCCGCGCCCACGCCTCGCCTCATGCCACCTCTGATCTCCTGCGTGGTAAGCCTACCCAGCATCCATCTGGGCTGCCTATTCTCATTCCACCAGCCTATTTCACACTGCTCGCAAACTATTTCACACCGCGTGCCTCTATTTTGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124231 lncRNA upstream 185360 21086591 ~ 21089803 (+) True G92380
TU124227 lncRNA upstream 191414 21080592 ~ 21083749 (+) True G92378
TU124189 lncRNA upstream 268683 21000833 ~ 21006480 (+) True G92358
TU124376 lncRNA downstream 54028 21406031 ~ 21446986 (+) True G92489
TU124419 lncRNA downstream 348825 21700828 ~ 21701423 (+) True G92525
TU124428 lncRNA downstream 415691 21767694 ~ 21811157 (+) True G92532
TU124431 lncRNA downstream 425333 21777336 ~ 21777770 (+) True G92535
TU124438 lncRNA downstream 438099 21790102 ~ 21791994 (+) True G92538
XM_015605864.2 mRNA upstream 13006 21253476 ~ 21262157 (+) True LOC103043722
XM_007249645.3 mRNA upstream 65285 21205967 ~ 21209878 (+) True taf12
XM_022673749.1 mRNA upstream 70199 21196508 ~ 21204964 (+) True ctps1
XM_022673750.1 mRNA upstream 70199 21197129 ~ 21204964 (+) False ctps1
XM_022673748.1 mRNA upstream 156965 21104780 ~ 21118198 (+) True LOC103036967
XM_022673753.1 mRNA downstream 112671 21464674 ~ 21511087 (+) True LOC103041380
XM_007254498.3 mRNA downstream 166162 21518165 ~ 21596922 (+) True rspo2
XM_007254499.3 mRNA downstream 276729 21628732 ~ 21633888 (+) True leng1
XM_007254501.3 mRNA downstream 282946 21634949 ~ 21659837 (+) False LOC103042418
XM_007254500.3 mRNA downstream 282948 21634951 ~ 21659837 (+) True LOC103042418
TU124179 other upstream 329657 20941426 ~ 20945506 (+) True G92350
TU124129 other upstream 453773 20819150 ~ 20821390 (+) False LOC103032252
XR_002650449.1 other upstream 2661446 18604038 ~ 18613717 (+) False LOC103028566
TU123412 other upstream 2783091 18491680 ~ 18492072 (+) True G91760
TU123391 other upstream 2853900 18417609 ~ 18421263 (+) False G91748
TU125154 other downstream 3346130 24698133 ~ 24708374 (+) True G93079
TU125228 other downstream 3562686 24914689 ~ 24965444 (+) True G93135
TU125312 other downstream 3959874 25311877 ~ 25313707 (+) True G93185
TU126114 other downstream 5596460 26948463 ~ 26948879 (+) True G93753
TU126349 other downstream 6567591 27919594 ~ 27939020 (+) False LOC111193309

Expression Profile