RNA id: XM_022673748.1


Basic Information

Item Value
RNA id XM_022673748.1
length 3052
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC103036967
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 21104780 ~ 21118198 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAATAGAGCagtttttaaagcacttttattgatttttttgtctCTAGTGCTTATAACGTTACCTGTTTGTAGCTACTACAGACTATTTTCAGTTAAGcatttttttgctgtgtgtCAAAGGGTCTCTCCCGCCCCTCACTGAATCCAGACATGCGCACTACAAAACATGGCGGACTCGCATCACGTTTGAGAAATTAACACAAATCTTTGCGAATAAGGCAGGGGAAGGAGGAGGGACTGGTCGCCTGCTTTTTCACGCCATCCTCTTGGCGCAAAAAGGCGCACTTCTtttgaaagaaagaagaaaacaacaGTCTAACTGGAGGAACCGTTTACCAAGACACTAATGCAGACCTGAGGCAAACTTAAATACAGCAGGATGAGAAAACCTGTGCTACACAAAGcTCTTGAATGGAAAGATGCCAAGCGTATCAAACATCCTCGCAGTGGGCGGCCGTCACGTGTTCCATTGCAGTATCAAGGGCATTTCAGCTGGGAGAAGTATCTGAAAGAGACTGGTGCAATAGCTGCTCCTGCCCATTGTTTCAAACAAAGCACTACACCCCCAGTAAATGAATTCAAGGCAGGGATGAAGCTGGAGGCTCAGGATCCCAGGAACACCACATCGACCTGTATTGCCACGGTTGTGGGACTGACCGGCTCACGCCTTAGGTTACGCCTGGATGGCAGCGACAACAAGAACGACTTCTGGCGCCTGGTAGATTCGTCTGAGATCCAGCCCATTGGCAGCTGTGAGAAGAGTGGAGGCATGTTGCAGCCACCCTTGGgGTTCCGTCTGAACGCATCATCCTGGCCTATGTTCTTACTGAAAACACTCAACGGTGCTGAGATGGCACCACCACGCATCTTTCACAAGCAGGAGCCTCCCTCTCCAGAGCAGAACTGTTTCCAAGTGGGTATGAAGCTAGAGGCGGTGGATAGGAAGAACCCACACTTTATTTGCCCCGCCACAGTGGGGGCCCTGCGAGGCGTGGAGGTGCAGGTCACCTTCGATGGCTGGAGGGGTGCCTTTGACTACTATTGCCGTTACGACTCCAGAGACATCTTTCCAGTGGGCTGGTGCTCACTCACCGGAGACAACCTGCAGCCACCTGGAACTAAAGtggggttaccgaagcagctggGTGCTTTGAGCTCCCTGCCTGACGGAGGTGTGGAGGGTGCAGGTATGCCCCCTACGTCAACCAAGCCTCCAGCCCAGAAGGGACGAAAACCTGGCCGCAGGAAAACTAAGCTGACCAGCACCTGGGGCCAAAAAGGCACCCCAGCCACTGTGGGGCTTGAGGTAGACCAGCCTGAAAAAGCACTTGAACCAGTAAAAGTCCCCAAGAAGAGAGGACCCAAACCTGGAAGCAAGctAGGCTGGGCTAAGCAGTCTGCATGGCTGGAGGGAGCGATGGCAGGTCCTGGTAGACCCAGAGGCCGACTGCCAGCCAGCTGGACTCAAAGACTGCAGCAGCAGGAGATGGAGCCCATCAAGATTCCAAAAAAGAGAGGTCCCAAACCTGGCAGCAAGAGGAAACCACGTGTGGTACCGGACCCAGTGCCCAATTCCCCCACGAGCAGCACTCCAGAACCAGACACCAGCTCTGTGCCTTTGGATAATGCTACCATACCCAGCTCTGCCCTACAGGCTCCAAcaGTTTGTGTGTACCTGAACAAGCAAGGGAAGGTTGGTCCTCACTTTGACCCACGGCGTGTGCAGGCTCTGCCTGACCACTTTGGCCCTGGTCGGGCATCCTCTGTGCTGCAGCAGTGTGTACAGGCCTGTGTGGACTGTGCCCACAACCAGAATACTGTCTTCAGCTGCCTCAAACCAGGGCATGGGGGGGAGCTTATCTCAGcaCACTTTGACCAGCAGCAGCACACGTTGACCTTACCAGCAGTAAACAGTGTGACATATGTGCTGCGCTTCCTTGAGAAGCTCTGCCACAACCTGCACTGCGATCCTCTGTTTGGCAGCCAGCCTGTGCCTCTGGGAGGGGTCCACTATGACAGCCATACTTACACAGAGCGAAGAGACCTGAATTCAGGGCCTGGCCGAGGTACTAAAAGATCTATTCAGGATTCATACAACAGCAGCCTGCTGCCccacaaaatcacaaaaaccCATCGCCTTTCCTCTGAAGAGCCATTTCCAGTGGAGAATGGAGGCTCAGAGCACTTGGAAAAAACACCACTCTCCCCTAGTAAGAATCTGAGTCTGCACCCTCTTTCTCAAAGCAGTAGTTCCCCCAGCCGGCTTCATCGCCTGGGCTCTGCAGGTTCAGAGCGGTTCCTGAGCTCCAGGGAGAGCCCACGACCCAGTGGCCAGGACCCCAACCTGTGGACAGTGGAAGACGTCATGCAGTTTATTCGAGATGTGGACCCTCAGCTAGGCTCGCATGCAGACCTTTTCCGCAAGCATGAGATTGATGGAAAGGCCCTCCTCTTGCTGCGCAGTGACATGATGATGAAATACATGGGCCTGAAGCTCGGTCCTGCCCTCAAACTCACCTTCCATATCGACAAACTCAAACAGGTTCGCTGATCTCGCATCAGCATCAGAACCATCTCCCAAATCCTGTCCCCCTCCCCATCTACCCCTAGAAAGCACAGGGCATATTGGAAACACATGCCCAAAGAAAGCATACTGAAGCATATTGTAGCACTCAGCAGAATTTCAGCCTGGCCATTTCTGAGTTTGTTTCCCTTTGTCTATTGTTGCCTACTTGTTCCTCTTTGTTGTTGTATGTTTTCGTGCATGTAGCACATTTTACATCTTACCTCTGTCTCATGCTAGGGTCAGTTGACTCACGCACAGTACTTTTTTATATGTTGTTTCATCCTAAATGTTATGTTTTGTAGTTAAAGCCAAGGTCTCAAATTTATGCAGGCTCACAGCCGTGTGGACAGTATCAAGGCCACTTTTGGGCCTCTGTTTCTAagacttgtttttataaatgtttaatggaTGACAGCCTCTGTTAATAAGGACCTGGATTTTCTTTTctataaaaatcatttttctgTAATAAACAGTTAAACACTA

Function

GO: NA

KEGG:

id description
K11461 SCMH1; polycomb protein SCMH1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124231 lncRNA upstream 14977 21086591 ~ 21089803 (+) True G92380
TU124227 lncRNA upstream 21031 21080592 ~ 21083749 (+) True G92378
TU124189 lncRNA upstream 98300 21000833 ~ 21006480 (+) True G92358
TU124192 lncRNA upstream 98300 21000833 ~ 21006480 (+) False G92358
TU124193 lncRNA upstream 98300 21000833 ~ 21006480 (+) False G92358
TU124376 lncRNA downstream 287833 21406031 ~ 21446986 (+) True G92489
TU124419 lncRNA downstream 582630 21700828 ~ 21701423 (+) True G92525
TU124428 lncRNA downstream 649496 21767694 ~ 21811157 (+) True G92532
TU124431 lncRNA downstream 659138 21777336 ~ 21777770 (+) True G92535
TU124438 lncRNA downstream 671904 21790102 ~ 21791994 (+) True G92538
XM_007249631.3 mRNA upstream 183986 20902197 ~ 20920794 (+) False LOC103035107
XM_007249630.3 mRNA upstream 183986 20902198 ~ 20920794 (+) True LOC103035107
XM_007249627.3 mRNA upstream 243845 20839975 ~ 20860935 (+) True stk40
XM_022673743.1 mRNA upstream 270284 20822678 ~ 20834496 (+) True oscp1
XM_007249625.3 mRNA upstream 270284 20822681 ~ 20834496 (+) False oscp1
XM_022673749.1 mRNA downstream 78310 21196508 ~ 21204964 (+) True ctps1
XM_022673750.1 mRNA downstream 78931 21197129 ~ 21204964 (+) False ctps1
XM_007249645.3 mRNA downstream 87769 21205967 ~ 21209878 (+) True taf12
XM_015605864.2 mRNA downstream 135278 21253476 ~ 21262157 (+) True LOC103043722
XM_022673753.1 mRNA downstream 346476 21464674 ~ 21511087 (+) True LOC103041380
TU124179 other upstream 159274 20941426 ~ 20945506 (+) True G92350
TU124129 other upstream 283390 20819150 ~ 20821390 (+) False LOC103032252
XR_002650449.1 other upstream 2491063 18604038 ~ 18613717 (+) False LOC103028566
TU123412 other upstream 2612708 18491680 ~ 18492072 (+) True G91760
TU123393 other upstream 2683517 18400488 ~ 18421263 (+) True G91748
TU124348 other downstream 150967 21269165 ~ 21352003 (+) True G92462
TU124346 other downstream 156965 21275163 ~ 21352003 (+) False G92462
TU124347 other downstream 156965 21275163 ~ 21352003 (+) False G92462
TU125154 other downstream 3579935 24698133 ~ 24708374 (+) True G93079
TU125228 other downstream 3796491 24914689 ~ 24965444 (+) True G93135

Expression Profile