Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_022673753.1 |
| length | 1589 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 13 |
| gene id | LOC103041380 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035906.1 |
| NCBI id | CM008309.1 |
| chromosome length | 35377769 |
| location | 21464674 ~ 21511087 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0001731 | formation of translation preinitiation complex | biological_process |
| GO:0043010 | camera-type eye development | biological_process |
| GO:0006446 | regulation of translational initiation | biological_process |
| GO:0043473 | pigmentation | biological_process |
| GO:0048703 | embryonic viscerocranium morphogenesis | biological_process |
| GO:0005852 | eukaryotic translation initiation factor 3 complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0033290 | eukaryotic 48S preinitiation complex | cellular_component |
| GO:0016282 | eukaryotic 43S preinitiation complex | cellular_component |
| GO:0003743 | translation initiation factor activity | molecular_function |
| id | description |
|---|---|
| K03250 | EIF3E, INT6; translation initiation factor 3 subunit E |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU124376 | lncRNA | upstream | 17688 | 21406031 ~ 21446986 (+) | True | G92489 |
| TU124231 | lncRNA | upstream | 374871 | 21086591 ~ 21089803 (+) | True | G92380 |
| TU124227 | lncRNA | upstream | 380925 | 21080592 ~ 21083749 (+) | True | G92378 |
| TU124189 | lncRNA | upstream | 458194 | 21000833 ~ 21006480 (+) | True | G92358 |
| TU124419 | lncRNA | downstream | 189741 | 21700828 ~ 21701423 (+) | True | G92525 |
| TU124428 | lncRNA | downstream | 256607 | 21767694 ~ 21811157 (+) | True | G92532 |
| TU124431 | lncRNA | downstream | 266249 | 21777336 ~ 21777770 (+) | True | G92535 |
| TU124438 | lncRNA | downstream | 279015 | 21790102 ~ 21791994 (+) | True | G92538 |
| TU124432 | lncRNA | downstream | 284445 | 21795532 ~ 21803014 (+) | True | G92536 |
| XM_015605864.2 | mRNA | upstream | 202517 | 21253476 ~ 21262157 (+) | True | LOC103043722 |
| XM_007249645.3 | mRNA | upstream | 254796 | 21205967 ~ 21209878 (+) | True | taf12 |
| XM_022673749.1 | mRNA | upstream | 259710 | 21196508 ~ 21204964 (+) | True | ctps1 |
| XM_022673750.1 | mRNA | upstream | 259710 | 21197129 ~ 21204964 (+) | False | ctps1 |
| XM_022673748.1 | mRNA | upstream | 346476 | 21104780 ~ 21118198 (+) | True | LOC103036967 |
| XM_007254498.3 | mRNA | downstream | 7078 | 21518165 ~ 21596922 (+) | True | rspo2 |
| XM_007254499.3 | mRNA | downstream | 117645 | 21628732 ~ 21633888 (+) | True | leng1 |
| XM_007254501.3 | mRNA | downstream | 123862 | 21634949 ~ 21659837 (+) | False | LOC103042418 |
| XM_007254500.3 | mRNA | downstream | 123864 | 21634951 ~ 21659837 (+) | True | LOC103042418 |
| XM_022673754.1 | mRNA | downstream | 123864 | 21634951 ~ 21659837 (+) | False | LOC103042418 |
| TU124348 | other | upstream | 112671 | 21269165 ~ 21352003 (+) | True | G92462 |
| TU124346 | other | upstream | 112671 | 21275163 ~ 21352003 (+) | False | G92462 |
| TU124347 | other | upstream | 112671 | 21275163 ~ 21352003 (+) | False | G92462 |
| TU124179 | other | upstream | 519168 | 20941426 ~ 20945506 (+) | True | G92350 |
| TU124129 | other | upstream | 643284 | 20819150 ~ 20821390 (+) | False | LOC103032252 |
| TU125154 | other | downstream | 3187046 | 24698133 ~ 24708374 (+) | True | G93079 |
| TU125228 | other | downstream | 3403602 | 24914689 ~ 24965444 (+) | True | G93135 |
| TU125312 | other | downstream | 3800790 | 25311877 ~ 25313707 (+) | True | G93185 |
| TU126114 | other | downstream | 5437376 | 26948463 ~ 26948879 (+) | True | G93753 |
| TU126349 | other | downstream | 6408507 | 27919594 ~ 27939020 (+) | False | LOC111193309 |
