rspo2 (rspo2,LOC107679648,LOC107755916,LOC107705839,LOC107600624)


Basic Information

Item Value
gene id rspo2
gene name rspo2,LOC107679648,LOC107755916,LOC107705839,LOC107600624
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 21518165 ~ 21596922 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254498.3
tctcacatattttttttttcttcacatcaTTTTGAGCAACAATTTCTCCACTTTTGGACGTGCCGGGTCTGGAGTGGAGAGAAGGGAAAAGAAGAGGAGGGGGGATGTAGggatggagggaaggagggaggggaaAGGAGCGGAGGGAGGGTGGGGGGCTTCCAAAACTCCCAACAAGCCCGACAAGATCCTGGGAGCCTCCAcgtgacagcagcagcagggctatATAGTAAAAGCAGGCAAAGCATCAggaccagcagcagcagtcagtAGTCTGTCTGAGAGCACGAGCAGAGAGATCCACAGAGAGGCTTCttcccacactctctctcacacacacacacactctcacactcagcGGATCAGAGCGTGATGAGGTTCAGGTGTTGCAGATCATAATCATTTGAAGAAGGAAGTCTACGGAggacaccaccaccaccaagaagaagaaaaagaagaagcagatCAGAAGAAGATCACATTTGCTACTGCTGCTATCAGCACTAACTACCATCTTTAGTTACTATCATCTTTCATCTTCATCGGAGGGCTTTCCTCGTCCATGGAACGGAGTAGCGCCTGAAGACTCGTGGTCTTCTGAAGATCTCGAGAAGATCTGGAgagcacagaaaaaaagtttCCCTCAGGGATGCTGAGTGCCCCAAACTCGCTGTGGCTCTCCGAAGGAACCTGAACTCGCCTTCTCTCCAGGATTAGACTTGTTTCTTCagtttttcctctctttctagAGGTATCTCTGTTTTATTTCCGTGCGTTTCGAGTCTCAGTCTGGCGTTTGCGCGCCGCTGATCGGCGCTGGGATGCCTGGACAGATCTCTCTGGCTCTTTACTGAAGTTTgatttttctttccattttttttttaaatttcgaAGTCTAGTTCCTCAGCCCCTCTCCACAGACGCAGACCACCGGAGCACACATATTCTGGGTTTTCTGCTCCTTCCCGCGTGTTTCATCACattcgttttttattttagatcttCATCATCTACTTCTTTATCATCCATGCGCTCTCAGATAATGACTTTCCTCGCCGATGGTCCGCCGCGCTGCCCGGCTCATGAGTGACACACTGAACTCCCCTTCCCCTCTCCGgagaccctctctctctctgctgcgcCCTCAGCCCGCACGCGCTCTCCCGGCCCCCTCGCTGTCCTCTCCGTCCTGAGCGGGGAGCGCTCACCCAGCCGCCCAGATGCAGTTTCGACTCTTCTCCTTTGCTCTAATCGTGTTGAACTGTATGGACTACAGCCACTGTCAGACTCAGTCGCACCGCTGGAGGAGGAACAAAAGAgCTAGCTATGTTTATCCAATCTGCAAAGGCTGCTCGGTGTGTTCGAAGGACAACGGGTGCATGACGTGCCAGCCCAAGCTGTTCCTGTTCCTGAGGAGGGAGAGGATGAGGCAGTACGGAGAGTGTCTCCACGTCTGCCCTTCAGGCTACTACGGCACCCGCGGCCCAGAGATCAACATGTGCTCAAGGTGCAGGATAGACAACTGTGAGACCTGCTTCAGTAAAGAGCACTGCACAAAGTGCAAGCCTGGCTTTTACTTGCACAAAACCCGCTGCTTCGAGAAGTGTCCTGAAGGGTTTGCGCCTCTGGACGACAGCATGGAGTGTGGAGAAGGCTGTGAGGTAGGCCAGTGGAGCGAGTGGGGAACGTGCACCAGAAGAAACAAAACATGTGGCTTTAAATGGGGCTTGGAGACGCGCACCAGGCATATTGTGAAGAAGCCACCAAAAGATACAATACCATGCCCTACGATCGCTGAGTCCAGGAGATGCAAAATGGCCATGCGACACTGCAGGAGAGGGGGATCAGGGAGGCACAAATCCAAAgatcagaagaagaagaacaagcaGAGGCTGCACTTCCGAGCCCAGAACCAGCACAGCGATCACCTGGCCTCACTGAGGGGCGGCCAGTAAAGACTGAGGGATACCCCATAGAACAAAGATCAGAAAGCTGCTAGCTGctgctcaacacacacacacacactaacacgcacacactaacactgacacacatgcacacacattcacacatgcaaatatgcgcacacacaaacgcacacacacaaatatatagttTCTCACCCTCATGCTGTGCACATattataaacatacacacacatacgctgTCTCTTTGTGCCTCCTGCTGCTTCCCCTCGTGCCGGTCACACGTGCCCCAACCCGAGACCCTTCCTGACATCATAGAACTGTGCAGCAGCTGTGCCCACCCAGTCTGAGGAGGAAGGACGAGGAAGAGCAGAGCCggaggaggagagaaaaggagTCACGGACTTTATAAGGTTGGAGGATGAGcccgagagagtgagagagcaggaGCCACAATGACCGGATGAAGAGTGTGTTATTAATGCCCTGAGAtaagagataagagagagagagagagactcgtctgtatttatgtaaaattataCGCCCATCGAAGGAGGTGGAATACGCCATGTATCGCCTTTTCTGTTGGCTCTGTACATTTTTGAGAGTACTCCAGTACCAGGCATAGTTGCAAAGTATTTTATTCTCGGCACAAGATGTTTACGTCCAGACCGCTTCGTTGCTCTAACTGTATATTGTGGATAACGGTAAAGTTTAGTTGTTTAACTAGCATGGCCACAAGCTCATGTGTACATAGTTGGTGAGTTTATCTaatgataatattaaaaatgaaacgTTACTGTATTTTCAGTATTGACTCCTTCACCGTTAAATGTGTTAGAAAAAGGTTATGATACCAGCTACAGATTAAAGagatttaaaacttaaaaaagaaacaaaaaaataaagaaatacataaataaaacatagccTTCGCATAGCTATTACATTTATATGGtatatattttgatttatttattgattcaattttgtacttttgtgtttggtgacatttttttttttcttttttttttttttttgtctctgtacCTGTTACTCCTCTGTGCTGAACTATTCTTTTGAATCACTTATAACAATACAAATATCTCCACCAGTGGAAGCAGTTTGTGTCTGATGTGTCTAATATCTGTTCTTCAGAAGAACTTCCCATGCTTTAAGCTTTAAGCTGACCCATAACAGAGCAGCTGAACTATTATAGGCAATGGAATGACAATGTATATATGATGTTCtattaaaaatgcaatttatgtCGCCTA

Function

symbol description
rspo2 Predicted to enable heparin binding activity. Acts upstream of or within fin development and skeletal system development. Predicted to be located in extracellular region. Is expressed in several structures, including brain; fin; forebrain midbrain boundary neural rod; pectoral fin bud; and posterior lateral line ganglion. Human ortholog(s) of this gene implicated in tetraamelia syndrome 2. Orthologous to human RSPO2 (R-spondin 2).

NR:

description
PREDICTED: R-spondin-2

GO: NA

KEGG:

id description
K23097 RSPO2; R-spondin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254498.3 True 3205 mRNA 0.47 5 21518165 21596922

Neighbor

gene id symbol gene type direction distance location
LOC103041380 eif3e,eif3ea,LOC108434212,LOC107755923,LOC108441687,LOC107551184 coding upstream 7078 21464674 ~ 21511087 (+)
LOC103043722 NA coding upstream 256008 21253476 ~ 21262157 (+)
taf12 taf12,LOC107700725,LOC107705731,LOC107566933,LOC107755488,LOC107588503 coding upstream 308287 21205967 ~ 21209878 (+)
ctps1 ctps1,ctps1b,LOC108433599,LOC107704971,LOC106584221 coding upstream 313201 21196508 ~ 21204964 (+)
LOC103036967 scmh1,LOC107755513,LOC107705663,LOC107556091,LOC107704976 coding upstream 399967 21104780 ~ 21118198 (+)
leng1 NA coding downstream 31810 21628732 ~ 21633888 (+)
LOC103042418 lmtk3,LOC108410634 coding downstream 38027 21634949 ~ 21659837 (+)
prpf31 prpf31 coding downstream 63348 21660270 ~ 21669327 (+)
LOC103043132 sphk2,LOC103388269,LOC106605743,LOC106699615,LOC106577300,LOC103136634 coding downstream 88619 21685541 ~ 21698150 (+)
LOC103045162 si:dkey-283b15.4,cyth2,LOC108410633,LOC107559044,LOC107688991,LOC108268159 coding downstream 106669 21703591 ~ 21720171 (+)
G92489 emc2,LOC107600623,LOC107666844,LOC107679651 non-coding upstream 71179 21406031 ~ 21446986 (+)
G92380 LOC108433596,LOC108271733,LOC108268173,LOC107705646,LOC107556089 non-coding upstream 428362 21086591 ~ 21089803 (+)
G92378 NA non-coding upstream 434416 21080592 ~ 21083749 (+)
G92358 NA non-coding upstream 511685 21000833 ~ 21006480 (+)
G92351 NA non-coding upstream 567757 20947197 ~ 20950408 (+)
G92525 NA non-coding downstream 103906 21700828 ~ 21701423 (+)
G92532 NA non-coding downstream 170772 21767694 ~ 21811157 (+)
G92535 NA non-coding downstream 180414 21777336 ~ 21777770 (+)
G92538 NA non-coding downstream 193180 21790102 ~ 21791994 (+)
G92536 LOC108410632,LOC108264157 non-coding downstream 198610 21795532 ~ 21803014 (+)
G92462 ptprub,LOC107705793,LOC107588504 other upstream 166162 21269165 ~ 21352003 (+)
G92350 sh3d21 other upstream 572659 20941426 ~ 20945506 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other upstream 657229 20839975 ~ 20860936 (+)
LOC103032252 LOC103032252,LOC108433590,LOC107755659,LOC107588526,LOC107700712,LOC107704880,LOC107705924 other upstream 696775 20818927 ~ 20821390 (+)
grik3 grik3,LOC100334689,LOC105019312,LOC106605119 other upstream 905881 20357549 ~ 20612284 (+)
G93079 NA other downstream 3101211 24698133 ~ 24708374 (+)
G93135 NA other downstream 3317767 24914689 ~ 24965444 (+)
G93185 LOC105900568,LOC101883708 other downstream 3714955 25311877 ~ 25313707 (+)
LOC103034726 LOC108436089 other downstream 4670571 26267493 ~ 26392435 (+)
G93753 NA other downstream 5351541 26948463 ~ 26948879 (+)

Expression


Co-expression Network