G92525


Basic Information

Item Value
gene id G92525
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 21700828 ~ 21701423 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU124419
TCTTAAGTAAAAACACAAGGTACTGGAAGTTTGGAAAATAGGTGGAACTTTTTTGTCGGCCTGAAGAATGTGGAATAGTCATAGGCGAGAGGAAGTGACATTACCATGGCTGTGATTCAACAGCCTTCCTGTGAGCTGTAGATGAAGTATGGGGTAGGATAACCCTACAAATGTCAGTGCGTTATGCCTCACTGGTTATCGCACTCCCATGAAGGGGTAAACAAGGAAGCCAACATCTCAGACCCTTTTCCTCCCCTTTGTCTGTCTCCGTATGGCACCTCTAACCTCACACACTAATCGGTGACTGCCACAGTACAGTAGctcttatctttctttctctcagactTTCCGCCTTCCTTTCAGGTCTGGCAAGCGGTTTGTTTAGCCCCCTTAATATCAGTGTCGAAGGAGGTCAGGAACAGGACCCTGCAACTGGGGTTTTTGTTAGTAAAATACTGTAGTATTGACAACAGAATGATGGTGACATGACTAGTAAAAGTACATTAAGTGTATGTTGTTCtggacattttatattttatatttatttttttataaatgtgtaaaacaaatattattaataaacatgttCTAGCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124419 True 596 lncRNA 0.41 1 21700828 21701423

Neighbor

gene id symbol gene type direction distance location
LOC103043132 sphk2,LOC103388269,LOC106605743,LOC106699615,LOC106577300,LOC103136634 coding upstream 2678 21685541 ~ 21698150 (+)
prpf31 prpf31 coding upstream 31501 21660270 ~ 21669327 (+)
LOC103042418 lmtk3,LOC108410634 coding upstream 40991 21634949 ~ 21659837 (+)
leng1 NA coding upstream 66940 21628732 ~ 21633888 (+)
rspo2 rspo2,LOC107679648,LOC107755916,LOC107705839,LOC107600624 coding upstream 103906 21518165 ~ 21596922 (+)
LOC103045162 si:dkey-283b15.4,cyth2,LOC108410633,LOC107559044,LOC107688991,LOC108268159 coding downstream 2168 21703591 ~ 21720171 (+)
LOC103046806 LOC108410646,LOC106605752,LOC106577252,LOC105018995,LOC108264199 coding downstream 45900 21747323 ~ 21767360 (+)
tfpt tfpt,mrpl51 coding downstream 68946 21770369 ~ 21775623 (+)
irx2 irx2 coding downstream 954410 22655833 ~ 22662537 (+)
LOC103025323 LOC108434880,LOC106593690 coding downstream 1167679 22869102 ~ 22874060 (+)
G92489 emc2,LOC107600623,LOC107666844,LOC107679651 non-coding upstream 253842 21406031 ~ 21446986 (+)
G92380 LOC108433596,LOC108271733,LOC108268173,LOC107705646,LOC107556089 non-coding upstream 611025 21086591 ~ 21089803 (+)
G92378 NA non-coding upstream 617079 21080592 ~ 21083749 (+)
G92358 NA non-coding upstream 694348 21000833 ~ 21006480 (+)
G92351 NA non-coding upstream 750420 20947197 ~ 20950408 (+)
G92532 NA non-coding downstream 66271 21767694 ~ 21811157 (+)
G92535 NA non-coding downstream 75913 21777336 ~ 21777770 (+)
G92538 NA non-coding downstream 88679 21790102 ~ 21791994 (+)
G92536 LOC108410632,LOC108264157 non-coding downstream 94109 21795532 ~ 21803014 (+)
G92615 NA non-coding downstream 191837 21893260 ~ 22018618 (+)
G92462 ptprub,LOC107705793,LOC107588504 other upstream 348825 21269165 ~ 21352003 (+)
G92350 sh3d21 other upstream 755322 20941426 ~ 20945506 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other upstream 839892 20839975 ~ 20860936 (+)
LOC103032252 LOC103032252,LOC108433590,LOC107755659,LOC107588526,LOC107700712,LOC107704880,LOC107705924 other upstream 879438 20818927 ~ 20821390 (+)
grik3 grik3,LOC100334689,LOC105019312,LOC106605119 other upstream 1088544 20357549 ~ 20612284 (+)
G93079 NA other downstream 2996710 24698133 ~ 24708374 (+)
G93135 NA other downstream 3213266 24914689 ~ 24965444 (+)
G93185 LOC105900568,LOC101883708 other downstream 3610454 25311877 ~ 25313707 (+)
LOC103034726 LOC108436089 other downstream 4566070 26267493 ~ 26392435 (+)
G93753 NA other downstream 5247040 26948463 ~ 26948879 (+)

Expression


Co-expression Network