G92358


Basic Information

Item Value
gene id G92358
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 21000833 ~ 21006480 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU124189
aagtgtcacgtctggtgctgttagctcctctgtcccttccacaccaagctctaacggaggttctcaggttaacaactacactacccagaatgcaccacccgctgacatcacgcactcacctgatcacgtgacacctcacctgcttcctcctggaagtcccgaatactgattactggcactataaaggtgcacgccaaacagactaccacgccgcgtattgtaggttatcctcgtacaaagcgttacttatctcttgtctcagtttactttgtgtatgaccttgcttttgtttcctcgacgccgatttttgcctctgcctttgatattggattgtttgtgtatgacctggactgtactttcaccaccgcctcttggattatctctgatactggattgcttgtgtatgaactctggactgtctctcgtttatggtatggttttgtctgcattgctctgtctactggtaaTTACCCctgtttctgtatcgaccctgattacatctgtttattattataataaacatactttgtttttatcagtatctgcgcttgtctgctattctgttctgaccatgacag
>TU124192
aagtgtcacgtctggtgctgttagctcctctgtcccttccacaccaagctctaacggaggttctcaggttaacaactacactacccagaatgcaccacccgctgacatcacgcactcacctgatcacgtgacacctcacctgcttcctcctggaagtcccgaatactgattactggcactataaaggtgcacgccaaacagactaccacgccgcgtattgtaggttatcctcgtacaaagcgttacttatctcttgtctcagtttactttgtgtatgaccttgcttttgtttcctcgacgccgatttttgcctctgcctttgatattggattgtttgtgtatgacctggactgtactttcaccaccgcctcttggattatctctgatactggattgcttgtgtatgaactctggactgtctctcgtttatggtatggttttgtctgcattgctctgtctactggtaaTTACCCctgtttctgtatcgaccctgattacatctgtttattattataataaacatactttgtttttatcagtatctgcgcttgtctgctattctgttctgaccatgacag
>TU124193
aagtgtcacgtctggtgctgttagctcctctgtcccttccacaccaagctctaacggaggttctcaggttaacaactacactacccagaatgcaccacccgctgacatcacgcactcacctgatcacgtgacacctcacctgcttcctcctggaagtcccgaatactgattactggcactataaaggtgcacgccaaacagactaccacgccgcgtattgtaggttatcctcgtacaaagcgttacttatctcttgtctcagtttactttgtgtatgaccttgcttttgtttcctcgacgccgatttttgcctctgcctttgatattggattgtttgtgtatgacctggactgtactttcaccaccgcctcttggattatctctgatactggattgcttgtgtatgaactctggactgtctctcgtttatggtatggttttgtctgcattgctctgtctactggtaaTTACCCctgtttctgtatcgaccctgattacatctgtttattattataataaacatactttgtttttatcagtatctgcgcttgtctgctattctgttctgaccatgacag

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:0004982 N-formyl peptide receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124189 True 578 lncRNA 0.45 2 21000833 21006480
TU124192 False 578 lncRNA 0.45 2 21000833 21006480
TU124193 False 578 lncRNA 0.45 2 21000833 21006480

Neighbor

gene id symbol gene type direction distance location
LOC103035107 eva1b,eva1ba,LOC108269790,LOC106605123 coding upstream 80039 20902197 ~ 20920794 (+)
oscp1 oscp1,oscp1b,LOC103033623,LOC107700711,LOC107755648 coding upstream 166337 20822678 ~ 20834496 (+)
mrps15 NA coding upstream 182012 20808932 ~ 20818821 (+)
csf3r NA coding upstream 192977 20789363 ~ 20807856 (+)
LOC103030656 LOC108433585 coding upstream 869936 20125330 ~ 20130897 (+)
LOC103036967 scmh1,LOC107755513,LOC107705663,LOC107556091,LOC107704976 coding downstream 98300 21104780 ~ 21118198 (+)
ctps1 ctps1,ctps1b,LOC108433599,LOC107704971,LOC106584221 coding downstream 190028 21196508 ~ 21204964 (+)
taf12 taf12,LOC107700725,LOC107705731,LOC107566933,LOC107755488,LOC107588503 coding downstream 199487 21205967 ~ 21209878 (+)
LOC103043722 NA coding downstream 246996 21253476 ~ 21262157 (+)
LOC103041380 eif3e,eif3ea,LOC108434212,LOC107755923,LOC108441687,LOC107551184 coding downstream 458194 21464674 ~ 21511087 (+)
G92351 NA non-coding upstream 50425 20947197 ~ 20950408 (+)
G92343 NA non-coding upstream 72212 20925458 ~ 20928621 (+)
G92335 NA non-coding upstream 126065 20874077 ~ 20874768 (+)
G92289 NA non-coding upstream 323659 20676966 ~ 20677174 (+)
G92238 NA non-coding upstream 685247 20315259 ~ 20315586 (+)
G92378 NA non-coding downstream 74112 21080592 ~ 21083749 (+)
G92380 LOC108433596,LOC108271733,LOC108268173,LOC107705646,LOC107556089 non-coding downstream 80111 21086591 ~ 21089803 (+)
G92489 emc2,LOC107600623,LOC107666844,LOC107679651 non-coding downstream 399551 21406031 ~ 21446986 (+)
G92525 NA non-coding downstream 694348 21700828 ~ 21701423 (+)
G92532 NA non-coding downstream 761214 21767694 ~ 21811157 (+)
G92350 sh3d21 other upstream 55327 20941426 ~ 20945506 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other upstream 139897 20839975 ~ 20860936 (+)
LOC103032252 LOC103032252,LOC108433590,LOC107755659,LOC107588526,LOC107700712,LOC107704880,LOC107705924 other upstream 179443 20818927 ~ 20821390 (+)
grik3 grik3,LOC100334689,LOC105019312,LOC106605119 other upstream 388549 20357549 ~ 20612284 (+)
LOC103028233 maneal,LOC102777073 other upstream 943513 20043702 ~ 20057320 (+)
G92462 ptprub,LOC107705793,LOC107588504 other downstream 262685 21269165 ~ 21352003 (+)
G93079 NA other downstream 3691653 24698133 ~ 24708374 (+)
G93135 NA other downstream 3908209 24914689 ~ 24965444 (+)
G93185 LOC105900568,LOC101883708 other downstream 4305397 25311877 ~ 25313707 (+)
LOC103034726 LOC108436089 other downstream 5261013 26267493 ~ 26392435 (+)

Expression


Co-expression Network