mrps15


Basic Information

Item Value
gene id mrps15
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 20808932 ~ 20818821 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249621.3
GCTGCGGCTGCAGGAGCTGTAGAGGAGAGGAAGGCAGGGGAGAGATGGCCGCCTGCATGCAGTGAGGAGTGAAGGACTGTACTGACTGTTCAGCGCTGACTGTAAGAGAGAACCAGAGCCGGGGAAAACATGCTCCTGAAGAACACCGTGATCGCCTCTGCGGCGCTGCTGCGAACACGGGCCGCTGCCTTCAGCTCGAGGAGCGGCATGAGTGTCTCTCCGGGACAGGTTTACAGTAACCTCAGCCGGACCCGGACACCCGGCAGTAATGAAATCCTCACAAGCCAGGCCGTGAGACAGTATGCCCGAGCAGCCAGAAGAAAGCCAGaATTTCAGAGTCAGCTGCAAGACTTATCGCCATCAATGCTGAAACATGAATATGCTTCTGTTCCTGTTGCTAACACAGTGGATGATGTGGTGAAGAAGCTTCTCTCTCTGGAATTTGCAAGCCATAGTGAAAAACTCCGCCTGAAAAAGGAACAGCTGATTGAGAAGGTCCAGAAGGATGTTAATGACCGCAGCTCCACGGAAGTTAAGGTGGCCATGTTGACAGCACAAATACGCAATTTTCAAGAGCACTTACACAAACACCCCAAGGACAAAGCTAACAAAAGATGGATGCTGATGAGCATTGACCGCAGGAATAAAATTCTAAAAGTCCTGAGAAAGACCCACTATGAATCTTTTGAGAAGGTTTGTCAAGAGCTGGGCATCACATATACCTTCCCTCAAGAGTACTACAGACGAACTACTCAACGATGGCTGGCCAAGAAGGCCCTGTGCGTCAAGGTCTTTAAAGAGGTCCAGAAGCAGAAAGCAGAacagagaaataaaatgaagttgAATCAGCAGAACAATGAAGCACCAAGCACTACAGGTGCCACAGGAACTGCAGTATAATTTTACACAACAAATGTAAAAGGCTAATCATACAAAGGAAGCAAAGCTAAGAACTGATTACTTAAAGTTCCGGCAGAAGTTTATTTGAACATTTACGTTTATTACTCTCAACTGTATTTGATGtcctttaatgttttatttgctaAACCTGTATCAAGACTTCCCATGCACTCTTCCAAGTGAATTAACCTTGTCCATCTATCCacattactaaataaataaattgtgctGTCTCA

Function

NR:

description
28S ribosomal protein S15, mitochondrial-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02956 RP-S15, MRPS15, rpsO; small subunit ribosomal protein S15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249621.3 True 1136 mRNA 0.46 8 20808932 20818821

Neighbor

gene id symbol gene type direction distance location
csf3r NA coding upstream 1076 20789363 ~ 20807856 (+)
LOC103030656 LOC108433585 coding upstream 678035 20125330 ~ 20130897 (+)
smpdl3b smpdl3b coding upstream 792340 20012775 ~ 20016592 (+)
themis2 NA coding upstream 804389 19989458 ~ 20004543 (+)
LOC103026527 LOC108433575 coding upstream 832624 19968250 ~ 19976308 (+)
oscp1 oscp1,oscp1b,LOC103033623,LOC107700711,LOC107755648 coding downstream 3857 20822678 ~ 20834496 (+)
LOC103035107 eva1b,eva1ba,LOC108269790,LOC106605123 coding downstream 83376 20902197 ~ 20920794 (+)
LOC103036967 scmh1,LOC107755513,LOC107705663,LOC107556091,LOC107704976 coding downstream 285959 21104780 ~ 21118198 (+)
ctps1 ctps1,ctps1b,LOC108433599,LOC107704971,LOC106584221 coding downstream 377687 21196508 ~ 21204964 (+)
taf12 taf12,LOC107700725,LOC107705731,LOC107566933,LOC107755488,LOC107588503 coding downstream 387146 21205967 ~ 21209878 (+)
G92289 NA non-coding upstream 131758 20676966 ~ 20677174 (+)
G92238 NA non-coding upstream 493346 20315259 ~ 20315586 (+)
G92236 NA non-coding upstream 494221 20314271 ~ 20314711 (+)
G92231 NA non-coding upstream 564885 20243465 ~ 20244047 (+)
G92142 NA non-coding upstream 711975 20089830 ~ 20096957 (+)
G92335 NA non-coding downstream 55256 20874077 ~ 20874768 (+)
G92343 NA non-coding downstream 106637 20925458 ~ 20928621 (+)
G92351 NA non-coding downstream 128376 20947197 ~ 20950408 (+)
G92358 NA non-coding downstream 182012 21000833 ~ 21006480 (+)
G92378 NA non-coding downstream 261771 21080592 ~ 21083749 (+)
grik3 grik3,LOC100334689,LOC105019312,LOC106605119 other upstream 196648 20357549 ~ 20612284 (+)
LOC103028233 maneal,LOC102777073 other upstream 751612 20043702 ~ 20057320 (+)
LOC103022253 lin28b,lin28a,LOC107744602,LOC107703899,LOC107732726,LOC107689005 other upstream 1053457 19731812 ~ 19755475 (+)
LOC103028566 fez2 other upstream 2195215 18604038 ~ 18613717 (+)
lyplal1 lyplal1 other upstream 2301897 18494359 ~ 18507035 (+)
LOC103032252 LOC103032252,LOC108433590,LOC107755659,LOC107588526,LOC107700712,LOC107704880,LOC107705924 other downstream 106 20818927 ~ 20821390 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other downstream 21154 20839975 ~ 20860936 (+)
G92350 sh3d21 other downstream 122605 20941426 ~ 20945506 (+)
G92462 ptprub,LOC107705793,LOC107588504 other downstream 450344 21269165 ~ 21352003 (+)
G93079 NA other downstream 3879312 24698133 ~ 24708374 (+)

Expression


Co-expression Network