LOC103030656 (LOC108433585)


Basic Information

Item Value
gene id LOC103030656
gene name LOC108433585
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 20125330 ~ 20130897 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605869.2
ACTGCTCCGCTTGTCTCGTCAGTAGCAGTCTCAGTCTTACAGCAACAGGTTGGTCTGTACAGACCGGTGTGACTAAAAGCTTGATGGAGAAAGTTATTTATCCTCGATAGGACTTAAGCCATATGCTACATCCTTTCTTCAATCAAGGATTTTGCATCGAACTGCCAAACATGCGGCAATAAAATGCCCCACAATGGTGACATATGTCATATGGTCAGTGGTTGCCTGGACTCTGAAGGGCTTGCTTTTCACTTGGAGGTTCTTCTGGGTAAACCCATACTATGCTATCAAGTCTACACCATGGATACAGCATGAAACTGCAGAAACGGGGAAGATGTACAAGCAGAGGAGGACCCAGCATGAGCGCAGCAGTGCCGTTCACAAGAGGCTACTGAGAGCAGAGGGGGAGATTCAGGATCTGAAGGCTCAGATCGCCAGTCAGAGGGCATCATGGGAGATGAGGTTCATGGACCTGCAGAGGAAACAGCATGACTTGAGAGATCAGCTGCACTCTGAGATTGTGGTTAGGTCGAGTGCCTTCCACAAAGTAACTGACTCTGAAGAAATGAGCGAGGTCTTCTCAGAGCCTGGCATGGAGAATGGACACCATTTAGAGGAGAAGGAACACGACTGCTCCAGTGGCCTGAACCAAATTCAACAGCTCAACAGAGGGCCGGATATGAGATTACTGCGAGATGGTGTTTACTCAAACAGTCTGACCTGCGGTCAAGGCACTTTTCCCACTGCTGTTGACTCCAGATCCACCTCAGCCATGTCTGTCAGCACTAGTGCTGGCTCATGGAGAAGTGGGATTGGCCCCCATCGTGTCTTTGTGCCCCATTCTCCAATGGACCTGCAGCCTGGCCACAGGGTGCGAATTATGCTGCCCTCTGGTCGAATCAGCACCGGAACACTGCGTTATCTGGGCCCGCTGCAGGGTTTACCAGAGATGCACTTGGGTGTGGAACTGGAGCTGGCTGAGAATGGACAGCAAACAGGCACCTATGAGGGACAGTTCTACTTTGACTGCAAACCTGGATATGGAGCATTTGTGGCATTCAGCAAGCTGTTAATGGCCTGGGAGTAGACCTATCAAAGAGTGAGAGGCGCATAAACAGTAATCAGTATCTTCATTCCCCTTATTAAAGGAGCTGATGACTTTGGACTTTGTTGAAATGTAAATTATCTTGCGGAGCATGTGAAGGCATACTGAAAACTTGTTTTctgatataaaacatgttttacatcAATAAAACTCCAATTAATACTGTAAGTAACCTAACAATAAACATACTGTTGTATAATT

Function

NR:

description
PREDICTED: uncharacterized protein LOC108433585

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605869.2 True 1306 mRNA 0.47 8 20125330 20130897

Neighbor

gene id symbol gene type direction distance location
smpdl3b smpdl3b coding upstream 108738 20012775 ~ 20016592 (+)
themis2 NA coding upstream 120787 19989458 ~ 20004543 (+)
LOC103026527 LOC108433575 coding upstream 149022 19968250 ~ 19976308 (+)
LOC103035022 LOC108434176 coding upstream 614454 19504446 ~ 19510876 (+)
ebag9 ebag9,LOC107705161,LOC107666870,LOC107600620 coding upstream 650154 19464330 ~ 19475176 (+)
csf3r NA coding downstream 658466 20789363 ~ 20807856 (+)
mrps15 NA coding downstream 678035 20808932 ~ 20818821 (+)
oscp1 oscp1,oscp1b,LOC103033623,LOC107700711,LOC107755648 coding downstream 691781 20822678 ~ 20834496 (+)
LOC103035107 eva1b,eva1ba,LOC108269790,LOC106605123 coding downstream 771300 20902197 ~ 20920794 (+)
LOC103036967 scmh1,LOC107755513,LOC107705663,LOC107556091,LOC107704976 coding downstream 973883 21104780 ~ 21118198 (+)
G92142 NA non-coding upstream 28373 20089830 ~ 20096957 (+)
G92141 NA non-coding upstream 40325 20084107 ~ 20085005 (+)
G92135 NA non-coding upstream 60733 20063993 ~ 20064597 (+)
G92134 yrdc non-coding upstream 62283 20059120 ~ 20063047 (+)
G92111 ppp1r8,ppp1r8b,LOC107689150,LOC107688979,LOC106605108,LOC105903676 non-coding upstream 145130 19977487 ~ 19980200 (+)
G92231 NA non-coding downstream 112568 20243465 ~ 20244047 (+)
G92236 NA non-coding downstream 183374 20314271 ~ 20314711 (+)
G92238 NA non-coding downstream 184362 20315259 ~ 20315586 (+)
G92289 NA non-coding downstream 546069 20676966 ~ 20677174 (+)
G92335 NA non-coding downstream 743180 20874077 ~ 20874768 (+)
LOC103028233 maneal,LOC102777073 other upstream 68010 20043702 ~ 20057320 (+)
LOC103022253 lin28b,lin28a,LOC107744602,LOC107703899,LOC107732726,LOC107689005 other upstream 369855 19731812 ~ 19755475 (+)
LOC103028566 fez2 other upstream 1511613 18604038 ~ 18613717 (+)
lyplal1 lyplal1 other upstream 1618295 18494359 ~ 18507035 (+)
G91760 NA other upstream 1633258 18491680 ~ 18492072 (+)
grik3 grik3,LOC100334689,LOC105019312,LOC106605119 other downstream 226652 20357549 ~ 20612284 (+)
LOC103032252 LOC103032252,LOC108433590,LOC107755659,LOC107588526,LOC107700712,LOC107704880,LOC107705924 other downstream 688030 20818927 ~ 20821390 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other downstream 709078 20839975 ~ 20860936 (+)
G92350 sh3d21 other downstream 810529 20941426 ~ 20945506 (+)
G92462 ptprub,LOC107705793,LOC107588504 other downstream 1138268 21269165 ~ 21352003 (+)

Expression


Co-expression Network