G92141


Basic Information

Item Value
gene id G92141
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 20084107 ~ 20085005 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU123914
TTTTGGATTtgactatttattttaaaacaacctAACAGTCATAACATAGTTCTGCATTTGTCCAAATATAAACACATGTCCACAAGATCCAAACTTCTAAGAATATACAGAAAACAAGAAGTGAAAATCTCTACACAACCTACCTAAAATATTGACGTCCAGACGATTGTGTGCAGAGTTCTTCAACAACTCCCGAAGAAATGCCGTTACAtagttaaaaacatttttatggcACTGAGGTAGCATAGAAATAATCTTTTTTACACTggccactgctggagcagcactcCAGGCACTGCTGGTACTGCAAGAAAGTTACAACCGGTTCCGACAGAGCATCCAGAAAGAGAAGCAGAGCCTCAGCTACAGAGTGGTTACCTCCAGGAAGGGTGTCAGGCGTGCATGTATCTAAACAATCTCTGATCTCCTCAAACTCACTGTGTAGGCCTGGTAGCTGGAAGAGGTCCTCCTAGAAAGAAACACAGGAAGATTTTTAACCACACCTGTTTAAGCAATTGTTTCACAATTGAAAAGCAGGCAAATGTACTTCAAGAACGGAACATAAATATCAGAACTATAAAAGTATTGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123914 True 591 lncRNA 0.40 3 20084107 20085005

Neighbor

gene id symbol gene type direction distance location
smpdl3b smpdl3b coding upstream 67515 20012775 ~ 20016592 (+)
themis2 NA coding upstream 79564 19989458 ~ 20004543 (+)
LOC103026527 LOC108433575 coding upstream 107799 19968250 ~ 19976308 (+)
LOC103035022 LOC108434176 coding upstream 573231 19504446 ~ 19510876 (+)
ebag9 ebag9,LOC107705161,LOC107666870,LOC107600620 coding upstream 608931 19464330 ~ 19475176 (+)
LOC103030656 LOC108433585 coding downstream 40325 20125330 ~ 20130897 (+)
csf3r NA coding downstream 704358 20789363 ~ 20807856 (+)
mrps15 NA coding downstream 723927 20808932 ~ 20818821 (+)
oscp1 oscp1,oscp1b,LOC103033623,LOC107700711,LOC107755648 coding downstream 737673 20822678 ~ 20834496 (+)
LOC103035107 eva1b,eva1ba,LOC108269790,LOC106605123 coding downstream 817192 20902197 ~ 20920794 (+)
G92135 NA non-coding upstream 19510 20063993 ~ 20064597 (+)
G92134 yrdc non-coding upstream 21060 20059120 ~ 20063047 (+)
G92111 ppp1r8,ppp1r8b,LOC107689150,LOC107688979,LOC106605108,LOC105903676 non-coding upstream 103907 19977487 ~ 19980200 (+)
G92104 NA non-coding upstream 127125 19956093 ~ 19956982 (+)
G92103 NA non-coding upstream 130014 19953546 ~ 19954093 (+)
G92142 NA non-coding downstream 4825 20089830 ~ 20096957 (+)
G92231 NA non-coding downstream 158460 20243465 ~ 20244047 (+)
G92236 NA non-coding downstream 229266 20314271 ~ 20314711 (+)
G92238 NA non-coding downstream 230254 20315259 ~ 20315586 (+)
G92289 NA non-coding downstream 591961 20676966 ~ 20677174 (+)
LOC103028233 maneal,LOC102777073 other upstream 26787 20043702 ~ 20057320 (+)
LOC103022253 lin28b,lin28a,LOC107744602,LOC107703899,LOC107732726,LOC107689005 other upstream 328632 19731812 ~ 19755475 (+)
LOC103028566 fez2 other upstream 1470390 18604038 ~ 18613717 (+)
lyplal1 lyplal1 other upstream 1577072 18494359 ~ 18507035 (+)
G91760 NA other upstream 1592035 18491680 ~ 18492072 (+)
grik3 grik3,LOC100334689,LOC105019312,LOC106605119 other downstream 272544 20357549 ~ 20612284 (+)
LOC103032252 LOC103032252,LOC108433590,LOC107755659,LOC107588526,LOC107700712,LOC107704880,LOC107705924 other downstream 733922 20818927 ~ 20821390 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other downstream 754970 20839975 ~ 20860936 (+)
G92350 sh3d21 other downstream 856421 20941426 ~ 20945506 (+)
G92462 ptprub,LOC107705793,LOC107588504 other downstream 1184160 21269165 ~ 21352003 (+)

Expression


Co-expression Network