csf3r


Basic Information

Item Value
gene id csf3r
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 20789363 ~ 20807856 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249622.3
CACTGGCCTAATACAGAGAGTGGAACACAAGTGCAATCAGATTAGTCTGATCTTGTCTCTGAGCTCTTAGACACAATGAAAGCGCTCTCAGGCCCTGGTGCTTTATGTGATCGATCACGCTGTACACCGGGCATGGAGGCTTGAAATCCTACACACATGCTTAGCTCCTGTCTTGAAAAGGACTGCTGCTCCTTATACTATACATTAACATCATGAAGCTACACTGGCTCCCAGTACGTGTGATGCTGTGGTCAACTATGTGTTCATTCACAGCAAATGTCAAAGCATCACCATGTGCTGAGATCCGCACTCTATCTGCAGTGGTTCTGAGTGGCTCTCCAGTCACAGCTTCCTGCTACATCAAAGAAGACTGCCCACTAACAAAAAGAGCAGATTTTCGTGTGGAATGGCCTTACAAAGCTAATTTAAGCTATGCTAGTGTGACCAGTCATGAAGAGAGGGTCTACCAAATCCTCATATCCAACCTCACAAACATGATAGCCATGCTGGAGTGCGCCATCTGCATTCATGAAGACTGCAATGTAGTGGCCGGGATGGAAATCAAAGCAGCATatcCTCCTCCTGCCCCCCGAGATTTAACCTGTGGGTTAAATCTGACTGAACAATACTCACTGTTGTGCACTTGGGACCCTGGTCAGGAAACTTCCATTCCAACAACCtataaactccacacagaaatcAGAGATTCTGCACAGAAGTTTGTCTATATTCCTCCACCTGGAAAGCATTTCTTCAGAATCCCTCGAGTCGGCTTTGCATTGTTTAATGATGTACAAGTTCAGGTGGTGGCAGAGAATGCCCTGGGCCGAGCCACCTCTGAGCCTTTGGTGCTGGACCCCATGGAAACCGCAAAACTGGATCCACCAGAGATACAGACAGTCACGGCAGAGACCTATGAATGCCTTGGTCTGAGTTGGAGTCTCTCGAAAGCACAAAAATGGATTACCAGGACTTTACATGTTGAGATCAGAATGAAACCCATGAGCAACAAAGTTTTGAACAGAGAGcatATAATCTCCAAGAAAAGTAAATCTGGAAAAACAGTACAGACGTGTAAACTGCTTCATGGGATGATGTACCAGTCTGAGATGAGAGTGAGGTATAACAGCAGTCCCTGGAGCGAGTGGAGTCGTCCCTCAGTGGCTACCACACGCATGAAGGCTCCCACCGGCCGACTGGTCACATGGCTGAAGCTTCTAGGGCAACCAGCAAACAGGCAGTATGAAGCAGAGCTGCTTTGGAAGCCATCTTTGCAGTTCCGTGCCAACAGCATGAATGTGTCTTACGTCGTCTCATTTGTGAGACCAcctggaaggaaggaagaattGTGCATCACAGACCAGCAACACTGCTCTTTCTCGATCCCTGTCGATATCAAAAGGATCCACCTGACAGCCGTGAACACAGCAGGGAAATCCAGCCCGACTGATGTGACAGTGTACAAATGGAAAGgtcGGGATCGTGCCATCAATCTAAAAGCTTTTCCAGTATCTGAAGAATCTATATTCACAAACTGGTCAAGCCCAAAATCTTCAGCCATCAGTGCCTATGTGTTAGAGTGGAAAGCACTGCATGAGGGCATTTTTACTACGGTCTCCTTTGAAATTGTGAACAAAAATCAGTCTGCTCTGGTATTTCCAGGTCTGGAGCCCTACAAGCCCTATAATTTTTCAATATATCCGAAGTATAAGGACGTTATTGGTCAGCCTTCTTCTGTTGTGGCTTACACAAAAGAGAAAGCCCCCCTTGAATCTCCGGATCTGAAGATCGGAGACCTCAGACCTTCATCTATCGAGCTACTTTGGGATGAACTTCCACTGCAGAAGAGAAATGGAAACATTACCAGCTATACTGTTTTCTACTGGGATAAGAAGAACAAGACAGGAgAGGCCAAGGTCACAGAGAGGCGGGTTGTTCTGAAAGATCTCAGTCCGTATTCTGTCTACAGCGTGCAGCTCATGACTAGCACAAATGGCGGGAGTGTGAATGGGTCTGTTATCTCAGTGATGACCCCATATGTTGATGCCATTGAAATAGTGCTGATTGTAATCCCGGCCTGTGTCGGACTGGCACTGCTTTTCCTGACAGGGATTACCTGTTTCAGCAATGATAAATGcttGAAAAAGTGCTTGTGGCCGATGATTCCTGATCCAGCCAATAGCAGTATTAAAAAGTGGACATTGACTGACTCAATGCAGGACATTCCCCCTCTGAAAGAGGTCAAGGACCCTGTGCCAGTACATCTTTCCCACTTCAGTCTCCTGAGCCTGTCTGAGACAGAGTTATGGAAGGGAAACACCCCAATATCTGAATACCCCCACTGTGGAAAGTGGACTTACACTGGTAAAAGTGTTGATGAGGAGCACTCTGACTCATCCCGTGATTCAGGTATCTATAACTCTGGATCTCAGAGTGAGTCTGTGCCCTATGCTACAGTTGTGTTTGCCAATCCATATCGCACCCAGCCAGCAGCTCCACCTGCCTACCTGCGCTCAGAGTCCACACAGCCTCTCCTAGCTGAAGAGGAGCCTTCCAGTCCTCAACCATATGAACAAATGGCAACCCAAGGGACAGTCTATGGAGCAGATCACTTTTCTGCAGTTCAGGAGGAtttaagaagagaagaagaaaatgagtCACATTGGGTAGACTTTCCTATGCTCCAGTCCTTGGAAATCAATGATATTAATAATCAGGGATGATTTTTATGTATGATATACATTCTGTCGTAAAGAAAAATGCTAATCTGTAGCTGTCATGGTGCCTTTTGCAATATAATGAATTTATTTcgaaatgtaaaatgtgcatATAAGGCCCTGTTCCTACCTGGTTTCATTTTTGCCTGGTTTCAttcttgttgtgtgtgtgtgtgcagtatgcTGCAAAGGTTTAGATGTAGCAGGAAAGGAGATGAAGAAAGCTGCTTTATTATCTGCTATACTCtatagcataaaaaataaaggtgctataAAGCATTCTTGGAGCGATGCCACAGAAGAACCATTTCTGATTGCATTAAGAAGatatattctgtaaataagataCATGTGGGAAGAACCTTCTAAATGTTTAAAGtgtagtttaaaatgtttgttactttttaagATTTAGGGATCACTCTGGTGTGGATGTGTAGTAGCACCTAGCATTGAATCTTGTGGTTTAAGGACTCTAACGTCCTCTCTTTTAGCATACCAGCTCTGTTCAGTTCAAATTCTGCATTTCATAGGTTTAACAATGCATGAATGAGCAGATGAAGAGGTTAAAGAAGATTGCTGCAGTTTTGCAATTAATACATTTGGCTTTGCAGGAATGGAGGTATAAGCACATTGAGgtactttaattttataaatactGCTTTacatttatagaaaaaaatattatggactgctgctttaaaaaatttTCTCATTCACATTTctgtgataatttttttttttattattattaaaagttgtTCTTGAACATATTAAGGTGTTTTGGCAGCTTAATGTGTCCCTGGTATGTATCACTGATCAAGCCCCCATTGACCACTGTACTTAGTGTTGTCCACTTATGATCAGATCACCCTAAACATATACTACTGTCAGGAGTGAAAGGGtcaacaatgttttttgtttattaactgATAACCATTAGAGATAGCACAAtatcacagtgttttatatttgatatttctGACCCCCAATCCAACTTCTTTCTGCTGCTACATTTTGATATGAATGTCATTTCCAAAAGCAATATATTATCTTTTGGCTTATACATTACCTGATAATAGTTAAATGCTGAAActataaagtattttttgctTTGAAGACTGCAGATgaaaatgtacactgtaaaatggtTTGttcattttgccacattatgtcTAAGGTAAACATACCTTGGTTGGTAACAAGCTATGTAATTCCACTCAAATAACCCTTAGGattaattttaagtgtttaagctGAATAATCCTTTTAAACGTTTTTGATAGTTATAATTTTACAGGTTGTAGGTCTCACATTGTATTGTCCTCAGTTACTAAAAATAGCATATATTGAGCTGCTGATTGTCTTCATGTTTAGCTTAGCACACTGATTAGCAAGGAAagacaatttaaataaaaatacttaacCTTCAGCTCTTTTTACCCAGCCTTTTTCAATGATCCCATATGCTCCAGTAGAAATCCATTAAAAAGACAGAGCTAGCAAGTCTCTGACTGCAGTACCCATCTTTCAGTGAATTACCATTAAGTTACtagtttttttctaatgttcATTATGTGGGAGCAAGCTGTAACTATATGGACCCTATAGTAATGGATGCATTCAGGACATGTCATGTGTAATTGGTCAATTAGTATAATCACTGACCTACATAATGGAACCTAATGATCCAACATTTGAAACTCATTGAGTGAAGCTAGCATGCCCTCCATGATAAGCAGTGCACAGAGGCTGTAATTTAACCCATTGTTAACCAACCCAAAGGAtagaaaattaattttattttctagtCCTGATTTAGGTCTACTTAGGTCTGCACTGCAGTTAGGTCCCGGTGCATCAGACAGGCTTTTCTAGTAGCTGTGggattgatttgtatttttgaTCTCTAAGAGTATTTGGTTACTTTGTATCACTGAGACCAGACCACATCatttctttattatatatttttaataataaaaatgatgtttttttta

Function

NR:

description
granulocyte colony-stimulating factor receptor isoform X1

GO:

id name namespace
GO:0030223 neutrophil differentiation biological_process
GO:0030224 monocyte differentiation biological_process
GO:0030225 macrophage differentiation biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0035162 embryonic hemopoiesis biological_process

KEGG:

id description
K05061 CSF3R, CD114; granulocyte colony-stimulating factor receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249622.3 True 4717 mRNA 0.41 17 20789363 20807856

Neighbor

gene id symbol gene type direction distance location
LOC103030656 LOC108433585 coding upstream 658466 20125330 ~ 20130897 (+)
smpdl3b smpdl3b coding upstream 772771 20012775 ~ 20016592 (+)
themis2 NA coding upstream 784820 19989458 ~ 20004543 (+)
LOC103026527 LOC108433575 coding upstream 813055 19968250 ~ 19976308 (+)
LOC103035022 LOC108434176 coding upstream 1278487 19504446 ~ 19510876 (+)
mrps15 NA coding downstream 1076 20808932 ~ 20818821 (+)
oscp1 oscp1,oscp1b,LOC103033623,LOC107700711,LOC107755648 coding downstream 14822 20822678 ~ 20834496 (+)
LOC103035107 eva1b,eva1ba,LOC108269790,LOC106605123 coding downstream 94341 20902197 ~ 20920794 (+)
LOC103036967 scmh1,LOC107755513,LOC107705663,LOC107556091,LOC107704976 coding downstream 296924 21104780 ~ 21118198 (+)
ctps1 ctps1,ctps1b,LOC108433599,LOC107704971,LOC106584221 coding downstream 388652 21196508 ~ 21204964 (+)
G92289 NA non-coding upstream 112189 20676966 ~ 20677174 (+)
G92238 NA non-coding upstream 473777 20315259 ~ 20315586 (+)
G92236 NA non-coding upstream 474652 20314271 ~ 20314711 (+)
G92231 NA non-coding upstream 545316 20243465 ~ 20244047 (+)
G92142 NA non-coding upstream 692406 20089830 ~ 20096957 (+)
G92335 NA non-coding downstream 66221 20874077 ~ 20874768 (+)
G92343 NA non-coding downstream 117602 20925458 ~ 20928621 (+)
G92351 NA non-coding downstream 139341 20947197 ~ 20950408 (+)
G92358 NA non-coding downstream 192977 21000833 ~ 21006480 (+)
G92378 NA non-coding downstream 272736 21080592 ~ 21083749 (+)
grik3 grik3,LOC100334689,LOC105019312,LOC106605119 other upstream 177079 20357549 ~ 20612284 (+)
LOC103028233 maneal,LOC102777073 other upstream 732043 20043702 ~ 20057320 (+)
LOC103022253 lin28b,lin28a,LOC107744602,LOC107703899,LOC107732726,LOC107689005 other upstream 1033888 19731812 ~ 19755475 (+)
LOC103028566 fez2 other upstream 2175646 18604038 ~ 18613717 (+)
lyplal1 lyplal1 other upstream 2282328 18494359 ~ 18507035 (+)
LOC103032252 LOC103032252,LOC108433590,LOC107755659,LOC107588526,LOC107700712,LOC107704880,LOC107705924 other downstream 11071 20818927 ~ 20821390 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other downstream 32119 20839975 ~ 20860936 (+)
G92350 sh3d21 other downstream 133570 20941426 ~ 20945506 (+)
G92462 ptprub,LOC107705793,LOC107588504 other downstream 461309 21269165 ~ 21352003 (+)
G93079 NA other downstream 3890277 24698133 ~ 24708374 (+)

Expression


Co-expression Network