ctps1 (ctps1,ctps1b,LOC108433599,LOC107704971,LOC106584221)


Basic Information

Item Value
gene id ctps1
gene name ctps1,ctps1b,LOC108433599,LOC107704971,LOC106584221
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 21196508 ~ 21204964 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673749.1
CGCGGGCAGCGGCTCACTGACAGCACTGACAACACCACCTACTGCTCAGACACTGCTGAACCGGAGAGTCTGTACCTCCGCACTGCTCTCACACCCGGGGTTCGGGgtGTTCTCCCAAAATGAAGTACATCCTGGTCACAGGTGGAGTCATATCTGGAATTGGTAAAGGTATCATTGCCAGTAGTGTAGGAACAATTCTAAAATCCTGTGGCCTTCATGTCACTGCAATCAAGATCGATCCCTACATTAATATAGATGCTGGCACTTTCTCTCCGTATGAGCATGGGGAAGTTTTTGTGCTGGATGATGGTGGTGAAGTTGATCTGGATTTAGGAAACTATGAACGCTTTCTGGATATTCGATTAACAAAGGACAACAATTTGACTACTGGgaagatctatcagtctgttataacgaaagaaagaagaggagaTTATCTCGGCAAGACTGTGCAAGtggttccACACATTACTGATGCTATTCAGGAATGGGTCATGCGCCAAGCAAAAGTCTCAgtggatgatgatggtgttgagCCACAAGTCTGTGTAATCGAGCTGGGGGGTACTGTTGGAGATATTGAGAGCATGCCTTTCATTGAAGCCTTTAGACAGTTTCAGTTCAAGGTGAAAAGGGAGAATTTCTGCAACATCCATGTCAGCCTTGTTCCTCAGCCCAGCACCACAGGAGAGCAGAAGACTAAACCCACACAGAACAGTGTGCGAGAGCTTCGTGGGTTGGGCCTGTCTCCAGATCTGattgtttgCCGTTGTTCCACACCTCTGGATActgcagtaaaagaaaaaatctccATGTTTTGTCATGTGGAGCCAGAGCAGgTTATCTGCATCCATGATGTATCTTCAATCTACAGAGTTCCTTTGCTTCTGGAGGATCAGGGCATGGTGGACTACTTTTGTCGAAGACTAGACCTACCCATTGAGATGAGGCCTCGTAGAATGCTCACCAAGTGGAAAGAAATGTCAGATAGGTCAGACCGGCTCTTGGAACACACCTCAATTGCATTGGTGGGAAAGTACACCAAGTTTTCCGACTCCTATGCTTCAGTCATTAAAGCACTTGAGCATTCTGCCCTTGCAATCAACCACAAGCTAGAGGTCAAATACATTGACTCTGCTGACCTAGAGCAAGCTACACAGCAGGAAGAGCCAGTGAAGTACCATGAAGCCTGGCAAAAACTCTGCAGTGCTGAtgGTGTTTTGGTACCTGGAGGATTTGGGGTACGGGGCACAGAGGGGAAAATCCAGGCTATTAGTTGGGCAAGGAAGCAGAAAAAGCCCTTTTTAGGTGTTTGTCTGGGCATGCAGCTCGCTGTGTGTGAATTTGCACGTAACGTGCTTGGCTGGCAAGACGCCAACTCAACTGAATTTGATCCTGAAACAAAGCATCCTGTAGTGATTGACATGCCAGAACATAACCCAGGACAAATGGGTGGCACTATGAGATTAGGGAAGAGGAGAACCATCTTTAAAAGTAACACCAGCATTCTGAgaaAATTGTATGGAGATGCTGAACATGTTGATGAAAGGCACAGACATCGCTTTGagGTGAATCCAGAACTGACACACTACTTTGAGGAGAAGGGGCTGCATTTTGTGGGCCAGGATGTGGAGGGGCAGCGAATGGAGGTCATTGAACTTGaagATTATGCTTATTTTGTGGGAGTGCAGTACCATCCAGAGTTCACTTCTCGTCCCATTAAGCCTTCACCTCCCTATTTTGGGCTACTTTTGGCGGCAGCAGGAAAACTTCAAAGCTTTATGCTTAAAGGATGCAGACTTTCACCACGAGACACTTACAGTGATCGCAGTGGCAGTAGCTCCCCAGACTCAGAACTCTCCGAGCTTAAGTTCCCAGCAGTCTCATAGAAAGGATGTTTTCACAGACGGGGGAGAAAAATGAGGAGAAAGCACAACATACTGCACATTTGTATTCCTTCTTATTGGGGACAAAACATCATGTTAGATGGACAGAATTTTTGTTCTTAGGGGAAACGAAATACTACAGTGTTGCAGCCTACAGAGAATTTTCTATTGTAACAGAACAGTTAGCTTTTAAAAGTCTATAAGAATTTAAATGCCTACACAAAAATGCTAactgattttacatttttgtggaactcaaatgtaatatttatgactatttatttacaaataaatgttttgagttatatatgtatacccatataaatatgtgtataaGTGAATGTTTGATTCAGTGGGCAAATGCCATatgcacatacatacatacatacatacattttactcTTATATCAACAGGttggatttttacattttatatctgGGTTGTTTGGTAAGACATACTAAACCTCATCCTGTACATTATATTGCAGATATTCTTTATTTAgcccatttatttaattatgtttcaATAGCCCACATGATGGACTACATAAGCAGCAAAAGCCCAAGTGTTTGCTCTCTACAATTACCTGCAAAGTTGACTCCAACTGCTGCTTGGTGAAAGTGTATCCTTGCTGACTGTAAGCGGGTAGCAACCTAAACCATGAATGATTTAAGATGTAGATGGGTTAGATTTGTAAAGCATTGTAGGATATGAAGACTGGTTAGAACTGAAGAATTATGGGGCCTACTATAGCTCTACATGAATGTCAATGTAATTGTTTCCTTTGGTGCCACaagtttgttttaatattactaTTTTGTGTTGTATAATAAAGCTATGGAATACTT
>XM_022673750.1
AAAAAAGTGCCATATATAAAAACGCTCCCTGCAGAAGTTTCGGTAGGATATTTGGAAAGCCCTGAATGAATATATCCAGGTAACGTTACAGTTCAGAGAATAGAGgtGTTCTCCCAAAATGAAGTACATCCTGGTCACAGGTGGAGTCATATCTGGAATTGGTAAAGGTATCATTGCCAGTAGTGTAGGAACAATTCTAAAATCCTGTGGCCTTCATGTCACTGCAATCAAGATCGATCCCTACATTAATATAGATGCTGGCACTTTCTCTCCGTATGAGCATGGGGAAGTTTTTGTGCTGGATGATGGTGGTGAAGTTGATCTGGATTTAGGAAACTATGAACGCTTTCTGGATATTCGATTAACAAAGGACAACAATTTGACTACTGGgaagatctatcagtctgttataacgaaagaaagaagaggagaTTATCTCGGCAAGACTGTGCAAGtggttccACACATTACTGATGCTATTCAGGAATGGGTCATGCGCCAAGCAAAAGTCTCAgtggatgatgatggtgttgagCCACAAGTCTGTGTAATCGAGCTGGGGGGTACTGTTGGAGATATTGAGAGCATGCCTTTCATTGAAGCCTTTAGACAGTTTCAGTTCAAGGTGAAAAGGGAGAATTTCTGCAACATCCATGTCAGCCTTGTTCCTCAGCCCAGCACCACAGGAGAGCAGAAGACTAAACCCACACAGAACAGTGTGCGAGAGCTTCGTGGGTTGGGCCTGTCTCCAGATCTGattgtttgCCGTTGTTCCACACCTCTGGATActgcagtaaaagaaaaaatctccATGTTTTGTCATGTGGAGCCAGAGCAGgTTATCTGCATCCATGATGTATCTTCAATCTACAGAGTTCCTTTGCTTCTGGAGGATCAGGGCATGGTGGACTACTTTTGTCGAAGACTAGACCTACCCATTGAGATGAGGCCTCGTAGAATGCTCACCAAGTGGAAAGAAATGTCAGATAGGTCAGACCGGCTCTTGGAACACACCTCAATTGCATTGGTGGGAAAGTACACCAAGTTTTCCGACTCCTATGCTTCAGTCATTAAAGCACTTGAGCATTCTGCCCTTGCAATCAACCACAAGCTAGAGGTCAAATACATTGACTCTGCTGACCTAGAGCAAGCTACACAGCAGGAAGAGCCAGTGAAGTACCATGAAGCCTGGCAAAAACTCTGCAGTGCTGAtgGTGTTTTGGTACCTGGAGGATTTGGGGTACGGGGCACAGAGGGGAAAATCCAGGCTATTAGTTGGGCAAGGAAGCAGAAAAAGCCCTTTTTAGGTGTTTGTCTGGGCATGCAGCTCGCTGTGTGTGAATTTGCACGTAACGTGCTTGGCTGGCAAGACGCCAACTCAACTGAATTTGATCCTGAAACAAAGCATCCTGTAGTGATTGACATGCCAGAACATAACCCAGGACAAATGGGTGGCACTATGAGATTAGGGAAGAGGAGAACCATCTTTAAAAGTAACACCAGCATTCTGAgaaAATTGTATGGAGATGCTGAACATGTTGATGAAAGGCACAGACATCGCTTTGagGTGAATCCAGAACTGACACACTACTTTGAGGAGAAGGGGCTGCATTTTGTGGGCCAGGATGTGGAGGGGCAGCGAATGGAGGTCATTGAACTTGaagATTATGCTTATTTTGTGGGAGTGCAGTACCATCCAGAGTTCACTTCTCGTCCCATTAAGCCTTCACCTCCCTATTTTGGGCTACTTTTGGCGGCAGCAGGAAAACTTCAAAGCTTTATGCTTAAAGGATGCAGACTTTCACCACGAGACACTTACAGTGATCGCAGTGGCAGTAGCTCCCCAGACTCAGAACTCTCCGAGCTTAAGTTCCCAGCAGTCTCATAGAAAGGATGTTTTCACAGACGGGGGAGAAAAATGAGGAGAAAGCACAACATACTGCACATTTGTATTCCTTCTTATTGGGGACAAAACATCATGTTAGATGGACAGAATTTTTGTTCTTAGGGGAAACGAAATACTACAGTGTTGCAGCCTACAGAGAATTTTCTATTGTAACAGAACAGTTAGCTTTTAAAAGTCTATAAGAATTTAAATGCCTACACAAAAATGCTAactgattttacatttttgtggaactcaaatgtaatatttatgactatttatttacaaataaatgttttgagttatatatgtatacccatataaatatgtgtataaGTGAATGTTTGATTCAGTGGGCAAATGCCATatgcacatacatacatacatacatacattttactcTTATATCAACAGGttggatttttacattttatatctgGGTTGTTTGGTAAGACATACTAAACCTCATCCTGTACATTATATTGCAGATATTCTTTATTTAgcccatttatttaattatgtttcaATAGCCCACATGATGGACTACATAAGCAGCAAAAGCCCAAGTGTTTGCTCTCTACAATTACCTGCAAAGTTGACTCCAACTGCTGCTTGGTGAAAGTGTATCCTTGCTGACTGTAAGCGGGTAGCAACCTAAACCATGAATGATTTAAGATGTAGATGGGTTAGATTTGTAAAGCATTGTAGGATATGAAGACTGGTTAGAACTGAAGAATTATGGGGCCTACTATAGCTCTACATGAATGTCAATGTAATTGTTTCCTTTGGTGCCACaagtttgttttaatattactaTTTTGTGTTGTATAATAAAGCTATGGAATACTT

Function

symbol description
ctps1b Predicted to enable CTP synthase activity and identical protein binding activity. Acts upstream of or within notochord development. Predicted to be active in cytoophidium and cytoplasm. Is expressed in blood cell and vascular endothelium. Human ortholog(s) of this gene implicated in immunodeficiency 24. Orthologous to several human genes including CTPS1 (CTP synthase 1).
ctps1 Enables CTP synthase activity and identical protein binding activity. Involved in B cell proliferation; CTP biosynthetic process; and T cell proliferation. Located in cytoophidium. Implicated in immunodeficiency 24. Biomarker of biliary tract benign neoplasm.

NR:

description
PREDICTED: CTP synthase 1-like

GO:

id name namespace
GO:0044210 'de novo' CTP biosynthetic process biological_process
GO:0006541 glutamine metabolic process biological_process
GO:0003883 CTP synthase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K01937 pyrG, CTPS; CTP synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673749.1 True 2735 mRNA 0.43 18 21196508 21204964
XM_022673750.1 False 2734 mRNA 0.42 18 21197129 21204964

Neighbor

gene id symbol gene type direction distance location
LOC103036967 scmh1,LOC107755513,LOC107705663,LOC107556091,LOC107704976 coding upstream 78310 21104780 ~ 21118198 (+)
LOC103035107 eva1b,eva1ba,LOC108269790,LOC106605123 coding upstream 275714 20902197 ~ 20920794 (+)
oscp1 oscp1,oscp1b,LOC103033623,LOC107700711,LOC107755648 coding upstream 362012 20822678 ~ 20834496 (+)
mrps15 NA coding upstream 377687 20808932 ~ 20818821 (+)
csf3r NA coding upstream 388652 20789363 ~ 20807856 (+)
taf12 taf12,LOC107700725,LOC107705731,LOC107566933,LOC107755488,LOC107588503 coding downstream 1003 21205967 ~ 21209878 (+)
LOC103043722 NA coding downstream 48512 21253476 ~ 21262157 (+)
LOC103041380 eif3e,eif3ea,LOC108434212,LOC107755923,LOC108441687,LOC107551184 coding downstream 259710 21464674 ~ 21511087 (+)
rspo2 rspo2,LOC107679648,LOC107755916,LOC107705839,LOC107600624 coding downstream 313201 21518165 ~ 21596922 (+)
leng1 NA coding downstream 423768 21628732 ~ 21633888 (+)
G92380 LOC108433596,LOC108271733,LOC108268173,LOC107705646,LOC107556089 non-coding upstream 106705 21086591 ~ 21089803 (+)
G92378 NA non-coding upstream 112759 21080592 ~ 21083749 (+)
G92358 NA non-coding upstream 190028 21000833 ~ 21006480 (+)
G92351 NA non-coding upstream 246100 20947197 ~ 20950408 (+)
G92343 NA non-coding upstream 267887 20925458 ~ 20928621 (+)
G92489 emc2,LOC107600623,LOC107666844,LOC107679651 non-coding downstream 201067 21406031 ~ 21446986 (+)
G92525 NA non-coding downstream 495864 21700828 ~ 21701423 (+)
G92532 NA non-coding downstream 562730 21767694 ~ 21811157 (+)
G92535 NA non-coding downstream 572372 21777336 ~ 21777770 (+)
G92538 NA non-coding downstream 585138 21790102 ~ 21791994 (+)
G92350 sh3d21 other upstream 251002 20941426 ~ 20945506 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other upstream 335572 20839975 ~ 20860936 (+)
LOC103032252 LOC103032252,LOC108433590,LOC107755659,LOC107588526,LOC107700712,LOC107704880,LOC107705924 other upstream 375118 20818927 ~ 20821390 (+)
grik3 grik3,LOC100334689,LOC105019312,LOC106605119 other upstream 584224 20357549 ~ 20612284 (+)
LOC103028233 maneal,LOC102777073 other upstream 1139188 20043702 ~ 20057320 (+)
G92462 ptprub,LOC107705793,LOC107588504 other downstream 64201 21269165 ~ 21352003 (+)
G93079 NA other downstream 3493169 24698133 ~ 24708374 (+)
G93135 NA other downstream 3709725 24914689 ~ 24965444 (+)
G93185 LOC105900568,LOC101883708 other downstream 4106913 25311877 ~ 25313707 (+)
LOC103034726 LOC108436089 other downstream 5062529 26267493 ~ 26392435 (+)

Expression


Co-expression Network