RNA id: XM_022673749.1


Basic Information

Item Value
RNA id XM_022673749.1
length 2735
RNA type mRNA
GC content 0.43
exon number 18
gene id ctps1
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 21196508 ~ 21204964 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCGGGCAGCGGCTCACTGACAGCACTGACAACACCACCTACTGCTCAGACACTGCTGAACCGGAGAGTCTGTACCTCCGCACTGCTCTCACACCCGGGGTTCGGGgtGTTCTCCCAAAATGAAGTACATCCTGGTCACAGGTGGAGTCATATCTGGAATTGGTAAAGGTATCATTGCCAGTAGTGTAGGAACAATTCTAAAATCCTGTGGCCTTCATGTCACTGCAATCAAGATCGATCCCTACATTAATATAGATGCTGGCACTTTCTCTCCGTATGAGCATGGGGAAGTTTTTGTGCTGGATGATGGTGGTGAAGTTGATCTGGATTTAGGAAACTATGAACGCTTTCTGGATATTCGATTAACAAAGGACAACAATTTGACTACTGGgaagatctatcagtctgttataacgaaagaaagaagaggagaTTATCTCGGCAAGACTGTGCAAGtggttccACACATTACTGATGCTATTCAGGAATGGGTCATGCGCCAAGCAAAAGTCTCAgtggatgatgatggtgttgagCCACAAGTCTGTGTAATCGAGCTGGGGGGTACTGTTGGAGATATTGAGAGCATGCCTTTCATTGAAGCCTTTAGACAGTTTCAGTTCAAGGTGAAAAGGGAGAATTTCTGCAACATCCATGTCAGCCTTGTTCCTCAGCCCAGCACCACAGGAGAGCAGAAGACTAAACCCACACAGAACAGTGTGCGAGAGCTTCGTGGGTTGGGCCTGTCTCCAGATCTGattgtttgCCGTTGTTCCACACCTCTGGATActgcagtaaaagaaaaaatctccATGTTTTGTCATGTGGAGCCAGAGCAGgTTATCTGCATCCATGATGTATCTTCAATCTACAGAGTTCCTTTGCTTCTGGAGGATCAGGGCATGGTGGACTACTTTTGTCGAAGACTAGACCTACCCATTGAGATGAGGCCTCGTAGAATGCTCACCAAGTGGAAAGAAATGTCAGATAGGTCAGACCGGCTCTTGGAACACACCTCAATTGCATTGGTGGGAAAGTACACCAAGTTTTCCGACTCCTATGCTTCAGTCATTAAAGCACTTGAGCATTCTGCCCTTGCAATCAACCACAAGCTAGAGGTCAAATACATTGACTCTGCTGACCTAGAGCAAGCTACACAGCAGGAAGAGCCAGTGAAGTACCATGAAGCCTGGCAAAAACTCTGCAGTGCTGAtgGTGTTTTGGTACCTGGAGGATTTGGGGTACGGGGCACAGAGGGGAAAATCCAGGCTATTAGTTGGGCAAGGAAGCAGAAAAAGCCCTTTTTAGGTGTTTGTCTGGGCATGCAGCTCGCTGTGTGTGAATTTGCACGTAACGTGCTTGGCTGGCAAGACGCCAACTCAACTGAATTTGATCCTGAAACAAAGCATCCTGTAGTGATTGACATGCCAGAACATAACCCAGGACAAATGGGTGGCACTATGAGATTAGGGAAGAGGAGAACCATCTTTAAAAGTAACACCAGCATTCTGAgaaAATTGTATGGAGATGCTGAACATGTTGATGAAAGGCACAGACATCGCTTTGagGTGAATCCAGAACTGACACACTACTTTGAGGAGAAGGGGCTGCATTTTGTGGGCCAGGATGTGGAGGGGCAGCGAATGGAGGTCATTGAACTTGaagATTATGCTTATTTTGTGGGAGTGCAGTACCATCCAGAGTTCACTTCTCGTCCCATTAAGCCTTCACCTCCCTATTTTGGGCTACTTTTGGCGGCAGCAGGAAAACTTCAAAGCTTTATGCTTAAAGGATGCAGACTTTCACCACGAGACACTTACAGTGATCGCAGTGGCAGTAGCTCCCCAGACTCAGAACTCTCCGAGCTTAAGTTCCCAGCAGTCTCATAGAAAGGATGTTTTCACAGACGGGGGAGAAAAATGAGGAGAAAGCACAACATACTGCACATTTGTATTCCTTCTTATTGGGGACAAAACATCATGTTAGATGGACAGAATTTTTGTTCTTAGGGGAAACGAAATACTACAGTGTTGCAGCCTACAGAGAATTTTCTATTGTAACAGAACAGTTAGCTTTTAAAAGTCTATAAGAATTTAAATGCCTACACAAAAATGCTAactgattttacatttttgtggaactcaaatgtaatatttatgactatttatttacaaataaatgttttgagttatatatgtatacccatataaatatgtgtataaGTGAATGTTTGATTCAGTGGGCAAATGCCATatgcacatacatacatacatacatacattttactcTTATATCAACAGGttggatttttacattttatatctgGGTTGTTTGGTAAGACATACTAAACCTCATCCTGTACATTATATTGCAGATATTCTTTATTTAgcccatttatttaattatgtttcaATAGCCCACATGATGGACTACATAAGCAGCAAAAGCCCAAGTGTTTGCTCTCTACAATTACCTGCAAAGTTGACTCCAACTGCTGCTTGGTGAAAGTGTATCCTTGCTGACTGTAAGCGGGTAGCAACCTAAACCATGAATGATTTAAGATGTAGATGGGTTAGATTTGTAAAGCATTGTAGGATATGAAGACTGGTTAGAACTGAAGAATTATGGGGCCTACTATAGCTCTACATGAATGTCAATGTAATTGTTTCCTTTGGTGCCACaagtttgttttaatattactaTTTTGTGTTGTATAATAAAGCTATGGAATACTT

Function

GO:

id name namespace
GO:0044210 'de novo' CTP biosynthetic process biological_process
GO:0006541 glutamine metabolic process biological_process
GO:0003883 CTP synthase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K01937 pyrG, CTPS; CTP synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124231 lncRNA upstream 106705 21086591 ~ 21089803 (+) True G92380
TU124227 lncRNA upstream 112759 21080592 ~ 21083749 (+) True G92378
TU124189 lncRNA upstream 190028 21000833 ~ 21006480 (+) True G92358
TU124376 lncRNA downstream 201067 21406031 ~ 21446986 (+) True G92489
TU124419 lncRNA downstream 495864 21700828 ~ 21701423 (+) True G92525
TU124428 lncRNA downstream 562730 21767694 ~ 21811157 (+) True G92532
TU124431 lncRNA downstream 572372 21777336 ~ 21777770 (+) True G92535
TU124438 lncRNA downstream 585138 21790102 ~ 21791994 (+) True G92538
XM_022673748.1 mRNA upstream 78310 21104780 ~ 21118198 (+) True LOC103036967
XM_007249631.3 mRNA upstream 275714 20902197 ~ 20920794 (+) False LOC103035107
XM_007249630.3 mRNA upstream 275714 20902198 ~ 20920794 (+) True LOC103035107
XM_007249627.3 mRNA upstream 335573 20839975 ~ 20860935 (+) True stk40
XM_022673743.1 mRNA upstream 362012 20822678 ~ 20834496 (+) True oscp1
XM_007249645.3 mRNA downstream 1003 21205967 ~ 21209878 (+) True taf12
XM_015605864.2 mRNA downstream 48512 21253476 ~ 21262157 (+) True LOC103043722
XM_022673753.1 mRNA downstream 259710 21464674 ~ 21511087 (+) True LOC103041380
XM_007254498.3 mRNA downstream 313201 21518165 ~ 21596922 (+) True rspo2
XM_007254499.3 mRNA downstream 423768 21628732 ~ 21633888 (+) True leng1
TU124179 other upstream 251002 20941426 ~ 20945506 (+) True G92350
TU124129 other upstream 375118 20819150 ~ 20821390 (+) False LOC103032252
XR_002650449.1 other upstream 2582791 18604038 ~ 18613717 (+) False LOC103028566
TU123412 other upstream 2704436 18491680 ~ 18492072 (+) True G91760
TU123391 other upstream 2775245 18417609 ~ 18421263 (+) False G91748
TU124348 other downstream 64201 21269165 ~ 21352003 (+) True G92462
TU124346 other downstream 70199 21275163 ~ 21352003 (+) False G92462
TU124347 other downstream 70199 21275163 ~ 21352003 (+) False G92462
TU125154 other downstream 3493169 24698133 ~ 24708374 (+) True G93079
TU125228 other downstream 3709725 24914689 ~ 24965444 (+) True G93135

Expression Profile