RNA id: TU124438


Basic Information

Item Value
RNA id TU124438
length 1867
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G92538
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 21790102 ~ 21791994 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACATTTCTCTTTCGCCTGTTTAACatttcatatacatatattttcatatatttgtgAATCTATGTGTAATTTATAAACTGCAATTCACATCGTTGTAAAAACCTGGACGAAAACCAAAGTGGTTTGAAACAAATACATTACAACAAATACACCAGAACACCACCTTCGCCACTGCAAGAAAGAGGAACTGATGCCAGTTTCTGCATTTTCCAAATGCATATGCTGACAGTTTAAACATtcaatagaaagaaaaaaaaaacagaagaggtCTGGATAAAACATGAAGCAGGAACCTTTGGATTACTGAGTGCAGCTGAGTTTAAGCAGAATTTATCTGCCTAAATGTTACCATAATGGACCATTAAAGGTCCAGTTGTAGATGACCTGACCATCTATAGACTGCAGAGAACATCCAAAATGGTTCAACATGTGATTTTACACAGCAATCgctttacttaaaatataagtatcataaaaatgtctaaattagttagaattaaataaaatggttGTGCTGGTGGTGGTCTGAGTTTTGAGTAAATTGTAGATCCTAGAGTTAGTCAAAAGACTGCTGGGCTCTAACTGTGTAATAGCTACATTCAATGTTGTAGCTACTGTACGGCCTTTTAATTAGATAATGAAACAATataaaatggcttaaaaatacTCATGCCCTGCCTGTAATTATTGCTTTTCCTATCATtgttcttgtaaaaaaaaaattactgagcaaacagaataataaaatcTCATGAGAGCACACAGGAGGAACTAAATGTGTGCGTGCATTAAGTGTGTTCAGGTCTCCGTTATGTAACTAATGACACTACCCTTCAAAGGTTTagcactttaaaaaaatctaaatatataaaacactagGTTTTCTTTCATGGTTAGAACTTCACATTATATACCAAGCTTTTCAGCTTTTGGcagctttctttaaaaaaaattattattcaaTCTGTTTAACAAGTGTGAAACCTAAAATTATTCAAACCATTACCAAAAGTAACAGTGAAAACATTACTCAAAGTGTAACCAAACATTTGACAGGCAGTGTCCATCCTTGCTAATAGGGAAGTGTGAGAACATGAACTGAGGGAACAAACTTTCAGAACCTAGTGTGATATTTAGGAAAAAAGGGGGTAGTGCAATAATTATACTCACCAGACACTCTTATCTCAGGGACTTTTGAGACTAGAGTAGAGCCTGAATTTCGAACCTGTGCACAAATGAGTGCCTGTGTGCATTATGTAGGGTGGTAGAGATAGGGAAAGTAACTCAGTGTGTAGGACTTGTCATGCTCTTTTAGTTTGCTTGTGCGTGGTTTGAGCACAGAGTCACTTCCACAGCTGAGCAATCTCAACTCAAACACTGCTGAGAATCAGCCTGGCAGGACTGTGCTCTCGTGTGCTACTTTCGGTTTGTCTCCCTCACTTTTTCCTTGCGTTATGGCTTTAAACAGTTCCTCCTTTACACTGTTTGCTCCATCTTGTTGCTGTGTAGTCATTTAAActgaagaaattaaaatacagatgaaaggagaaaaaaaaaacagatgacagAAAAGACGGCTCAATCAGCAAAGGGAGGGAACATGGGGATTTCTCCAAAATCTTCACTATTGAAATTCGCAGACTGATCCAACATCGACAGAACATCCtggaaaataacaaaatagtATAATTTAGAGATTTATATAGCATGtgtttaaaaaggtgtggtttctattatttatatacacagagGTCAATGAAATCTTAGAAAAAAAACTCGATTCAGACGGGGAAGATTTTGAATCGATTTACAAATGCCAAGAATTCAGACCTGCCAACATGTGCACATTTTGCTAAATGGCTTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124431 lncRNA upstream 12332 21777336 ~ 21777770 (+) True G92535
TU124419 lncRNA upstream 88679 21700828 ~ 21701423 (+) True G92525
TU124376 lncRNA upstream 343116 21406031 ~ 21446986 (+) True G92489
TU124231 lncRNA upstream 700299 21086591 ~ 21089803 (+) True G92380
TU124227 lncRNA upstream 706353 21080592 ~ 21083749 (+) True G92378
TU124432 lncRNA downstream 3538 21795532 ~ 21803014 (+) True G92536
TU124434 lncRNA downstream 4988 21796982 ~ 21797784 (+) False G92536
TU124554 lncRNA downstream 101266 21893260 ~ 21951030 (+) False G92615
TU124540 lncRNA downstream 126584 21918578 ~ 21919161 (+) True G92605
TU124553 lncRNA downstream 136455 21928449 ~ 21951030 (+) False G92615
XM_007254513.3 mRNA upstream 14479 21770369 ~ 21775623 (+) True tfpt
XM_007254516.3 mRNA upstream 22742 21747323 ~ 21767360 (+) True LOC103046806
XM_022673757.1 mRNA upstream 69931 21703591 ~ 21720171 (+) True LOC103045162
XM_022673755.1 mRNA upstream 91952 21686025 ~ 21698150 (+) True LOC103043132
XM_022673765.1 mRNA downstream 863839 22655833 ~ 22662537 (+) False irx2
XM_007254530.3 mRNA downstream 863840 22655834 ~ 22662537 (+) True irx2
XM_007254531.3 mRNA downstream 1077108 22869102 ~ 22874060 (+) True LOC103025323
XM_007254532.3 mRNA downstream 1185918 22977912 ~ 23023100 (+) True LOC103025629
XM_007254533.3 mRNA downstream 1248944 23040938 ~ 23066260 (+) False slc6a3
TU124348 other upstream 438099 21269165 ~ 21352003 (+) True G92462
TU124346 other upstream 438099 21275163 ~ 21352003 (+) False G92462
TU124347 other upstream 438099 21275163 ~ 21352003 (+) False G92462
TU124179 other upstream 844596 20941426 ~ 20945506 (+) True G92350
TU124129 other upstream 968712 20819150 ~ 20821390 (+) False LOC103032252
TU125154 other downstream 2906139 24698133 ~ 24708374 (+) True G93079
TU125228 other downstream 3122695 24914689 ~ 24965444 (+) True G93135
TU125312 other downstream 3519883 25311877 ~ 25313707 (+) True G93185
TU126114 other downstream 5156469 26948463 ~ 26948879 (+) True G93753
TU126349 other downstream 6127600 27919594 ~ 27939020 (+) False LOC111193309

Expression Profile