Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU124431 |
| length | 300 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 2 |
| gene id | G92535 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035906.1 |
| NCBI id | CM008309.1 |
| chromosome length | 35377769 |
| location | 21777336 ~ 21777770 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0043603 | cellular amide metabolic process | biological_process |
| GO:0043604 | amide biosynthetic process | biological_process |
| GO:0043043 | peptide biosynthetic process | biological_process |
| GO:0006412 | translation | biological_process |
| GO:0006518 | peptide metabolic process | biological_process |
| id | description |
|---|---|
| ko03010 | Ribosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU124419 | lncRNA | upstream | 75913 | 21700828 ~ 21701423 (+) | True | G92525 |
| TU124376 | lncRNA | upstream | 330350 | 21406031 ~ 21446986 (+) | True | G92489 |
| TU124231 | lncRNA | upstream | 687533 | 21086591 ~ 21089803 (+) | True | G92380 |
| TU124227 | lncRNA | upstream | 693587 | 21080592 ~ 21083749 (+) | True | G92378 |
| TU124193 | lncRNA | upstream | 770856 | 21000833 ~ 21006480 (+) | False | G92358 |
| TU124438 | lncRNA | downstream | 12332 | 21790102 ~ 21791994 (+) | True | G92538 |
| TU124432 | lncRNA | downstream | 17762 | 21795532 ~ 21803014 (+) | True | G92536 |
| TU124434 | lncRNA | downstream | 19212 | 21796982 ~ 21797784 (+) | False | G92536 |
| TU124554 | lncRNA | downstream | 115490 | 21893260 ~ 21951030 (+) | False | G92615 |
| TU124540 | lncRNA | downstream | 140808 | 21918578 ~ 21919161 (+) | True | G92605 |
| XM_007254513.3 | mRNA | upstream | 1713 | 21770369 ~ 21775623 (+) | True | tfpt |
| XM_007254516.3 | mRNA | upstream | 9976 | 21747323 ~ 21767360 (+) | True | LOC103046806 |
| XM_022673757.1 | mRNA | upstream | 57165 | 21703591 ~ 21720171 (+) | True | LOC103045162 |
| XM_007254503.3 | mRNA | upstream | 79186 | 21685541 ~ 21698150 (+) | False | LOC103043132 |
| XM_022673765.1 | mRNA | downstream | 878063 | 22655833 ~ 22662537 (+) | False | irx2 |
| XM_007254530.3 | mRNA | downstream | 878064 | 22655834 ~ 22662537 (+) | True | irx2 |
| XM_007254531.3 | mRNA | downstream | 1091332 | 22869102 ~ 22874060 (+) | True | LOC103025323 |
| XM_007254532.3 | mRNA | downstream | 1200142 | 22977912 ~ 23023100 (+) | True | LOC103025629 |
| XM_007254533.3 | mRNA | downstream | 1263168 | 23040938 ~ 23066260 (+) | False | slc6a3 |
| TU124348 | other | upstream | 425333 | 21269165 ~ 21352003 (+) | True | G92462 |
| TU124346 | other | upstream | 425333 | 21275163 ~ 21352003 (+) | False | G92462 |
| TU124347 | other | upstream | 425333 | 21275163 ~ 21352003 (+) | False | G92462 |
| TU124179 | other | upstream | 831830 | 20941426 ~ 20945506 (+) | True | G92350 |
| TU124129 | other | upstream | 955946 | 20819150 ~ 20821390 (+) | False | LOC103032252 |
| TU125154 | other | downstream | 2920363 | 24698133 ~ 24708374 (+) | True | G93079 |
| TU125228 | other | downstream | 3136919 | 24914689 ~ 24965444 (+) | True | G93135 |
| TU125312 | other | downstream | 3534107 | 25311877 ~ 25313707 (+) | True | G93185 |
| TU126114 | other | downstream | 5170693 | 26948463 ~ 26948879 (+) | True | G93753 |
| TU126349 | other | downstream | 6141824 | 27919594 ~ 27939020 (+) | False | LOC111193309 |
