G92615


Basic Information

Item Value
gene id G92615
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 21893260 ~ 22018618 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU124553
ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatacacatgtttcagatgttttttAACTTGGCTGGTTTGTTATGACTGAGCGTGTCCAGGTTCCTGAGTGTGTGGGCCGATCAAAACTCGTCTCGATTACTGCGTCTCTCTCGGAGCTCCTCCAGTGAAGTCATCACATCCTCCAGTGACCTTTGACCAAGCTGCTTTCCTCCTCTTGTCCGTACGCTGACCGTGCCACTCTCCCGCTCCTTCTCTCCAACCA
>TU124554
ctgtgtgtgtgtgtgtgtgtgtgtgtgtatatacacatgtttcagatgttttttAACTTGGCTGGTTTGTTATGACTGAGCGTGTCCAGGTTCCTGAGTGTGTGGGCCGATCAAAACTCGTCTCGATTACTGCGTCTCTCTCGGAGCTCCTCCAGTGAAGTCATCACATCCTCCAGTGACCTTTGACCAAGCTGCTTTCCTCCTCTTGTCCGTACGCTGACCGTGCCACTCTCCCGCTCCTTCTCTCCAACCA
>TU124555
ctgtgtgtgtgtgtgtgtgtgtgtgtgtatatacacatgtttcagatgttttttAACTTGGCTGGTTTGTTATGACTGAGCGTGTCCAGGTTCCTGAGTGTGTGGGCCGATCAAAACTCGTCTCGATTACTGCGTCTCTCTCGGAGCTCCTCCAGTGAAGTCATCACATCCTCCAGTGACCTTTGACCAAGCTGCTTTCCTCCTCTTGTCCGTACGCTGACCGTGCCACTCTCCCGCTCCTTCTCTCCAACCA
>TU124556
TCTGGCTATTCTGGTGTAGCAGCCAACACTGGACTCACACCTGACTAAGCTGGACCCCAGCAGTCTTTCCCTGCTTTTAGGAAGCGTCTCTAAAGAGAGGACACGAGGTGCAACTTACAAACGAggctattttattataaatactttAGTCAAGCATTTGTAACTGAATGTTAATTCTGACCTCGTCCACTGATCTATTCAGGTCAGTCGGGTTCAGTTGAGTTGTCCTGGTTCGAGAGCAGGAACACAATGAAGAGTCTGTTTGGTTTTCAGAGAGTTCGAACATTAAACCGATGAAGAGTGTGTTTATACATGAGtgggtgggagtgtgtgtgtgtgtgagatagagagaaggagaTCCAATAAAGTttatacatctctctctctctctctcctaattttatgtatgtgtgtgagggaACAAGATTCAGGAAAGTTTACACTTGTATAAGTATACACATATTCAGGGTAATAAACTGCCCAATGGGAGTTGTCTCCATcctgtgtgtgtgtgtgtgtat
>TU124557
TCTGGCTATTCTGGTGTAGCAGCCAACACTGGACTCACACCTGACTAAGCTGGACCCCAGCAGTCTTTCCCTGCTTTTAGGAAGCGTCTCTAAAGAGAGGACACGAGGTGCAACTTACAAACGAggctattttattataaatactttAGTCAAGCATTTGTAACTGAATGTTAATTCTGACCTCGTCCACTGATCTATTCAGGTCAGTCGGGTTCAGTTGAGTTGTCCTGGTTCGAGAGCAGGAACACAATGAAGAGTCTGTTTGGTTTTCAGAGAGTTCGAACATTAAACCGATGAAGAGTGTGTTTATACATGAGtgggtgggagtgtgtgtgtgtgtgtgtgtgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124553 False 255 lncRNA 0.51 2 21928449 21951030
TU124554 False 253 lncRNA 0.51 2 21893260 21951030
TU124555 False 253 lncRNA 0.51 2 21928449 21951030
TU124556 True 521 lncRNA 0.42 2 21950295 22018618
TU124557 False 349 lncRNA 0.45 2 21950295 22013994

Neighbor

gene id symbol gene type direction distance location
tfpt tfpt,mrpl51 coding upstream 117637 21770369 ~ 21775623 (+)
LOC103046806 LOC108410646,LOC106605752,LOC106577252,LOC105018995,LOC108264199 coding upstream 125900 21747323 ~ 21767360 (+)
LOC103045162 si:dkey-283b15.4,cyth2,LOC108410633,LOC107559044,LOC107688991,LOC108268159 coding upstream 173089 21703591 ~ 21720171 (+)
LOC103043132 sphk2,LOC103388269,LOC106605743,LOC106699615,LOC106577300,LOC103136634 coding upstream 195110 21685541 ~ 21698150 (+)
prpf31 prpf31 coding upstream 223933 21660270 ~ 21669327 (+)
irx2 irx2 coding downstream 637215 22655833 ~ 22662537 (+)
LOC103025323 LOC108434880,LOC106593690 coding downstream 850484 22869102 ~ 22874060 (+)
LOC103025629 LOC108434887,LOC107701802,LOC108272386,LOC107758826 coding downstream 959294 22977912 ~ 23023100 (+)
slc6a3 slc6a3,LOC108272311,LOC107564665 coding downstream 1022320 23040938 ~ 23066757 (+)
dcdc2 dcdc2 coding downstream 1066953 23085571 ~ 23120098 (+)
G92532 NA non-coding upstream 82103 21767694 ~ 21811157 (+)
G92536 LOC108410632,LOC108264157 non-coding upstream 90246 21795532 ~ 21803014 (+)
G92538 NA non-coding upstream 101266 21790102 ~ 21791994 (+)
G92535 NA non-coding upstream 115490 21777336 ~ 21777770 (+)
G92525 NA non-coding upstream 191837 21700828 ~ 21701423 (+)
G92645 NA non-coding downstream 49023 22067641 ~ 22067996 (+)
G92647 LOC108434877 non-coding downstream 66592 22085210 ~ 22085542 (+)
G92648 NA non-coding downstream 72960 22091578 ~ 22091887 (+)
G92669 NA non-coding downstream 88395 22107013 ~ 22107343 (+)
G92683 NA non-coding downstream 234401 22253019 ~ 22253231 (+)
G92462 ptprub,LOC107705793,LOC107588504 other upstream 541257 21269165 ~ 21352003 (+)
G92350 sh3d21 other upstream 947754 20941426 ~ 20945506 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other upstream 1032324 20839975 ~ 20860936 (+)
LOC103032252 LOC103032252,LOC108433590,LOC107755659,LOC107588526,LOC107700712,LOC107704880,LOC107705924 other upstream 1071870 20818927 ~ 20821390 (+)
grik3 grik3,LOC100334689,LOC105019312,LOC106605119 other upstream 1280976 20357549 ~ 20612284 (+)
G93079 NA other downstream 2679515 24698133 ~ 24708374 (+)
G93135 NA other downstream 2896071 24914689 ~ 24965444 (+)
G93185 LOC105900568,LOC101883708 other downstream 3293259 25311877 ~ 25313707 (+)
LOC103034726 LOC108436089 other downstream 4248875 26267493 ~ 26392435 (+)
G93753 NA other downstream 4929845 26948463 ~ 26948879 (+)

Expression


Co-expression Network