RNA id: XM_022673755.1


Basic Information

Item Value
RNA id XM_022673755.1
length 5094
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC103043132
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 21685541 ~ 21698150 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGGTAACACAGGTTACCGTCGCTGTGTAGCTATTTAATTTCATTAGTTAAAAGGGCCAGTTTTGTGTATACAGGCAGCAGCAGAGTGTTATCTGTATTTTATCGTGGGTAAATGTTTTCTCTGATTGTGACACTTTGTCGTTTTTGGCCTTAAcagcagagctagctaactaaataacAGACTAGCCTGATCACTGCTGTGGACGAGTTTGATCAGATCGTTTATATCTAATCTCTAATCAGCTGTTAATTATTTTCTGATTAATATTGTGTAGCTAGAGATGGGAGCGGGTGATGGTCGGTGGTTAATGTCACTGTGTGGAGAGAGTTAACTAAGCCCATATAGCATATAACAACCTTCAGCTCACATGTCAAACCAACCCAACTGAAACGACTTTAGACTCTCACCTTCTGGTTTCAGGTGATCTGTGCTCTGATGATCATCTACTGTTGTGATTAATTGTCTTTATACTTGAGCTTTATCCATCTAGATtagcttgtttgtttgtaaatgtttaaCCCTGTCCACAGTTTGGCTCAGCTGGTTAAAGCTGTGCTGAATTTATCTCTACTGTTACCTTCCttgttttagctttttaaaagctgtttcTCTTTGGTGTCTTTCCTTATCGACCCAAGAAAGCAACTTTGCCCAGAGGGCAAATGTCTAATCAGTTAGCTAAAAGGAATAGTTGCTGTTAAAGGAATGTCTGTGCTCTCCTGTGAAGTGGTGTTGGTAGGGCTTTGCATGTTTGGGGCATACCAAAGCCTAAAACAATGAACAAGAAGGATTACAACAAAACAGGAATGTTGTGACATAATGCTCTCACCGCTGTAATCCCCCTGTGCTCTTCTGGATCTGCATTGTTTGGtctgttgtttattattattttttttgttctgtttatttgcttttttggaTCAATTGCCTGCAGAAATTGAAGAACACTGGAATTTCAATGGATTACAAATCTTGGATTTTGTGGCACGTGTCTATCGGGTGATTATGGATAGAATGTAACCCATAAGCTACTTCTACAGACTGAGACACATCCCGACATCCATCACCTCCCTCCCTGCCTGACCTTTTAATAGAGCAGGTATTTGttgtgaacagaaaaaaacactttgggcATTACGCAAATAATTTATCAAGTGTTTTCGCCTTGCACTGGCCataaacctctctctctaccattAGCGAAAAATCATCTTCGTCCAACAGTCCCTGCATAGTTCCTGTGATTTTTAAgacgtttattttttttgttgactcagttttatgtttttgaccTCAAGACAGATGCTGTTGAGCAGATGCTGGCTATCAATGCTGTTTTATAGTACTGTCTGTAAGCAACGCTAACAACACTTCAAGAAAGTGGTGTAAGGATGAGcttgtactttatttaaagcttttaaaactgATAGTCACTTTCATTTGTCACATTTGACATCaggttttagatttttcaaCACGTAAAAGAGCAGCCATGCTTTGAGGAAGCACTTTAGTTCACATTCGGCTGGGacagtaaatgaataaatgtgaaCAATTAATTGTTGCATGTGACATCCACATCCTATTTTTTTGGTTGAAACACTACAGTGAGCTTTAAAGGCCTGGACTGATGGCCTTTAGgattacagaattattttaatgcattgttTGCATTGTTGAACAGATGTTTTTATTAAGAGGATTAAGCATTTGTTGCTTTAAGCAAAAAGCACTAAGGAAAACATATTAGTTCCATCAGGGATTAGAAAACCTGACCTTTAGTGATCTTTTTTGGACAAAAGGACAAAAATATCTAGATAATCTAGAATCGACAGAACCAACTGGGATCATTCAAGAAACTACAGGATGGACAAACCCAACCAGTAACCTGAACTCCTCGTTTCTTTTTACCGTCCCTGATAAGGCTTTAGGCAAAGGTGTTCCATAACTCTTTGGAAACACTTTACCTGCTGTTCTGTCCAAacattaactgtttttttctctagTGAGTCCTTCTGAAACTCTACCGTAAAGTGTTCTGCATGACCCGCTCAAATCCTTCAGTTCTGGATGTCCTCTCCTGACCCTGCGGATCATCTCCAGCTGTGAAAATGCGCTCCCCAGGGCCACGGAGTTCGTCCCCATCCCCAGTCCTCTCTCCGTCCCCTGGACTGGCCCAGGAGGCCCTGCTGCATGGGCAGTTTGGGGGCTGGAGTAGCGGAAGCAGTGCAGGAGGAGGCAGTggtagtaacagtaacagtaacagttgcCCCAGCAGCCCTGGAGTAACGCTCCCGCCCAGTCCGGCCTCATCTAGCTACGCCCTGACCCTCACCCCCACAAACATCCATGTCCAGCGGCTCTCCCCGCGCCCAGGAAAGGACTCTCGACTGCTGCTGCCGGTGGCGGAGCTGGCTGGGTGTAGCTGTCCAAGAGCACCGGCTCCACCACTGCTGGTGCTGTACTGGTACCCGGCAGGGCGGCGTAGGAAAGGTGTGTCCCGGCGCAGACAGGTCCGAGTGTACCTTGCTGAGAGTCGAGCTGAAGCAGAGAAATGGAACGCAGCCATTCAGTGCCTGCTGAGGGGAATGGATGTCAGTTCCAGtacagAATTTAGCAAAAGCATGTTACCCCGCCCTCGTCGTCTGCTGCTATTGGTCAATCCATTCAGTGGGCGGGGACAGGCAATGCAGTGGTGCCAAACGCACATACTGCCCATGATCAGAGAAGCAAACATCAGCTACAACCTCATACAGACAGAGCGCCAGAATCACGCTCGTGAGCTGGTTAGGGAGATCTCTCTGCATGAGTGGGATGGCATCATTATCGTCTCTGGAGATGGACTACTGCATGAGGTAATCAATGGCCTCATGGAGAGGCCAGACTGGGAACAAGCAATAAAGACTCCAGTGGGAATTCTGCCGTGTGGCTCTGGAAATGCCCTGGCTGGCTCAATCAACCACTACGCAGGATATGACATGTGCCTTCGGGAGCCCCTCCTCCTCAACTGCTGCTTCCTTCTTTGTCGGGGCGGAGTCAGACCCATGGACCTGGTGTCCGTGACGACAAGTCCCTTGCCGCCCTCCTCTTCGTCCAATCAAAATGGCCGTCCACCTGCTCCCAGAAGGCTATTCTCTTTCCTGTCAGTGGCGTGGGGTTTTGTGTCGGATGTGGACATTGAGAGTGAACGCTACAGGGGGCTTGGCTCCGCTCGCTTTACTCTGGGAACGCTGGTGCGTCTGGCCTCCCTGCGATCCTACAAAGGCCGCCTGTCCTACCTGCCCCCTGCAGTCATCAACCCGTCCCCTGACGTGACCCCGCAGCCCCCTCGCCGTCCACTCTCCAGGAGCATCACGGAGGGCCTGGAGGGCTTCTGTAGGACTCCTATCCACCGCACCTGCTCTGACATGGGCATCAGCGAACAGCGGAGCCTTCGCAAAGAGGATGGCGAGagggagctggagagagagcgagaaagagagaaagaacggcaggagagagagagggagaggaaaagGAGGAGAGATAGAGCGCAAGGTGTTGGCGTGGTGAGGGCTAGTAGCCTCGCGGAGGACCGGGAAAGGGAGATGGAGGCAGAGGAGAGGATGGAAGGAACGTCCGGGTCAAGCTCAGAGTCAAACGAACGCCAGGACGAGTGTGCGTCTGGGAATGGAGAGGAAGAAGTGAAAGAGGATGATTGCAGAAGCAGTGGGACAGAGGGAGCACTAGATGCGAGAGATGTGAGCGAGGAATATGGTGTGGATGAAGGAAGAGAGGCTGAGGAGTGCGAAGATGAGCCCCTAGAGCCGCGGCAGGTGCTACGTAAAAACTCTGCCCCCTCCTCTCAAATCATCAAGGCTTTCTTCAGCCAGCCAATCGGTGGCACCGGTTCAGAGGAGACACTGGACGCAGACGAGGATATAAATGGAACCTATTTCCAGCGAGAGCCCTGGAAAGAGCCGCTGGACCCACGTGAACGTTCCCTCACCATTTCTTCACCTTTCCGTCATTCACCATTCTCCTACAAATCCAAAGGGgttctggaccagaaccagaacccaTCAAAACCTCGCCCACTCTCTCTTCTGCACCAGTCTCACTCAAACTCTCTCCCACCCAAATTCCcttccctctcactctccctctctcccaccCCTCCATCCTCTCCATCCTGTGCATCCCCTCATAGCTCCGCCTACCTCGCCCCACGGCCCGGCACCCCTGGCTCCTCCTCCCCATCACCCTCTCTCCGCTCCCCCTCCCAGTCTTTCACCTTTGACCTGGCCGAGCCAGCTGGCCCATTCAAGAACCGCTCTTTGGTCTCCACCCCTAGTACTCCACCCCACGACGACCTGCTGCCACCTCTGGACCAACCCTTGCCCACGCGGGACTGGGTGACTATAGAGGGTGATTTTGTTCTAGTGCTCGCCATCTACCAGTCCCATCTGGGCGCTGACCTGTTGGCTGCGCCGCATGCTCGTTTTGATGATGGCCTGATTCATTTGACTTTTGTGCGGGCGGGCATCTCCCGGGCTACGCTGCTACGGCTTTTCCTTGCAATGGAGAGGGGTGCCCACCTGTCTATGAGCTCTCCATATGTCAGCCACGTTTCTGCTCGAGCATTCCGCCTGCAACCACTCTCCTCACGTGGGACCCTAACAGTGGATGGGGAGGTGGTGCCCTACGGACCACTTCAGGCACAGATTCATCCCTCCATGGCTCGTCTCATTGTTGGAGATTCTGGGGTAAAGATCACTAGATTCTGACCTGCTGGGATTTAAACTGGAGAGGATCTTTTCTACACACTCTGGCTTacgtaatgctacagcatccaCTTCTGGGAAGAGAGATTGGAGGATTGAAATAGCCAGCAATTGCAATAACAGCTTTTACTGGGATTTACTAAAAGGGATTGCCTAATCGAGCTGCGCACAAACGACCGGATTACCAGCGAGTTTACCGAAGGGATGACAATTTGAGGCCTATTGCACGACCACAGGATTACACTTATTTAGCTTTACTTAAGGCCGAAGCGTGAAAACATtaatgtctgaaaataaaaaaggggggTGTGAGGAGTGAAGCACTTTGAA

Function

GO: NA

KEGG:

id description
K04718 SPHK; sphingosine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124376 lncRNA upstream 239039 21406031 ~ 21446986 (+) True G92489
TU124231 lncRNA upstream 596222 21086591 ~ 21089803 (+) True G92380
TU124227 lncRNA upstream 602276 21080592 ~ 21083749 (+) True G92378
TU124192 lncRNA upstream 679545 21000833 ~ 21006480 (+) False G92358
TU124419 lncRNA downstream 2678 21700828 ~ 21701423 (+) True G92525
TU124428 lncRNA downstream 69544 21767694 ~ 21811157 (+) True G92532
TU124431 lncRNA downstream 79186 21777336 ~ 21777770 (+) True G92535
TU124438 lncRNA downstream 91952 21790102 ~ 21791994 (+) True G92538
TU124432 lncRNA downstream 97382 21795532 ~ 21803014 (+) True G92536
XM_007254508.3 mRNA upstream 16698 21660270 ~ 21669327 (+) True prpf31
XM_007254501.3 mRNA upstream 26188 21634949 ~ 21659837 (+) False LOC103042418
XM_007254500.3 mRNA upstream 26188 21634951 ~ 21659837 (+) True LOC103042418
XM_022673754.1 mRNA upstream 26188 21634951 ~ 21659837 (+) False LOC103042418
XM_007254499.3 mRNA upstream 52137 21628732 ~ 21633888 (+) True leng1
XM_022673757.1 mRNA downstream 5441 21703591 ~ 21720171 (+) True LOC103045162
XM_007254516.3 mRNA downstream 49173 21747323 ~ 21767360 (+) True LOC103046806
XM_007254513.3 mRNA downstream 72219 21770369 ~ 21775623 (+) True tfpt
XM_022673765.1 mRNA downstream 957683 22655833 ~ 22662537 (+) False irx2
XM_007254530.3 mRNA downstream 957684 22655834 ~ 22662537 (+) True irx2
TU124348 other upstream 334022 21269165 ~ 21352003 (+) True G92462
TU124346 other upstream 334022 21275163 ~ 21352003 (+) False G92462
TU124347 other upstream 334022 21275163 ~ 21352003 (+) False G92462
TU124179 other upstream 740519 20941426 ~ 20945506 (+) True G92350
TU124129 other upstream 864635 20819150 ~ 20821390 (+) False LOC103032252
TU125154 other downstream 2999983 24698133 ~ 24708374 (+) True G93079
TU125228 other downstream 3216539 24914689 ~ 24965444 (+) True G93135
TU125312 other downstream 3613727 25311877 ~ 25313707 (+) True G93185
TU126114 other downstream 5250313 26948463 ~ 26948879 (+) True G93753
TU126349 other downstream 6221444 27919594 ~ 27939020 (+) False LOC111193309

Expression Profile