RNA id: XM_007254500.3


Basic Information

Item Value
RNA id XM_007254500.3
length 10052
RNA type mRNA
GC content 0.45
exon number 16
gene id LOC103042418
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 21634949 ~ 21659837 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACACAAAACGGTTTCATTGGCGCCTGACGTATTTGATCTAGACAGTGGAGAACAGGAgccgggagagagagagaaggggggtgATATTAACGCGTCTGACGTAGTTACCATTTTCTGGTGAGAAAACAGGCTAGCTGAGCTAACGTTCATGTACTGATCTCACtcgttttttatatatatataaaaagaatatCTCCAAAAGCAAGTGTGTAAAcacatttagattatttaatgtaaatatctAGTGTAGTCAAGCTGAGCGATATCGGCGGGTGGAAGAGAAGCACAAAGGCGCTTTAAAGCCCGGATTAGAGACGAAGGAGGAGGGTAAGAGGGGCGCTAgcagcatcaccaccaccatcaccacaacaacaacagcatcaGCACCATCCGCGGCGGAGCTCCTTCATTCGAGCGGGACAGAGTGAGAGGCCGGCGGCGCGGATGGTGCGCGGAAACCCAGTGGCAGTATGCGAGCACCGCGGCGCTGGGGGaccgtgctgctgctgctagcgGGGCTCATGTCCCTCCTCAGCCCGGACAGAGCGCTCGGAGCGCCGCAGAGAGAAGTTTCCGTCTCGCGGGAtggctctctctcccctccaccCTACGTTGTCATCCTTATCTCCTGCTCTGGCCTGGTCTCCTTCATTCTGCTGCTCCTCACCTGTCTGTGCTGTAAACGGGGAGGAGTTGGCTTCAATGAATTTGATAATGCTGAGGGAGAAGAATGCTCAGCGGGCTCCAGTCCTGCGCCCGAGGACAGCCTGTCCTCCTGTCCATCTCTCCCAGAGGTCTATACACTGCCTCTGCGAGACCGGACATGCCCGGCACTGGCCAATGGCATAGACTCCAGTTCTAAGTGTTTCCGTAGACACACTCTCAACTACCTGCAGGAGATAGGAAATGGATGGTTTGGAAAGgTGATCCTGGCAGAGGTACTCTGTGactgcagctcctctcaggCTGTGGTTAAGGAGCTGAAAGTCAGTGCCAGTCCTCTTGAACAGCGCAAGTTCCTGGCAGAGGCTGAGCCATACAGAAGCCTCCAGCATCCCAACATCCTGCAGTGTTTGGGGCAGTGCAGTGAGAGCATTCCCTATCTCCTGGTCATGGAGTTCTGCCAGCTGGGGGATCTCAAAAGGTATCTAAGAGCTCAGAGGAAGTCAGATGGCATGACGCCAGACCTTTTGAATCGCGACCTCTTGACGCTGCAGCGCATGGCGTATGAGATCACATCAGGCCTCCTGCACCTTCATGAAAACAACTACATACACAGTGATCTGGCGCTGAGAAACTGTCTGCTCACCTCAGATCTGACGGTCAGGATCGGAGACTACGGTCTTTCACACAACCATTATAAGGAAGACTACTATCTGACTCCGGATAAGCTGTGGATTCCTCTGCGCTGGATCGCTCCAGAGCTGCTGGAATTCCGAGGAGGACTAGTGGTTACAGACCAGACCAAAACAAGCAACGTGTGGTCATTGGGCGTTGTAATTTGGGAGCTGTTTGAATTTGGCGCTCAGCCACACAGACATCTGAGTGATGAAGAGGTTCTTACCTTTGTAATTAAGGAGAGACAGATCACACTGGCTCAACCTCGCCTCAAGCTCTCCCATGCAGACTACTGgtATGAAGTCATGCAGTCATGCTGGCTTCCATCCTCTCAGCGTCCAACGGTCAACGAAGTTTTCATTCTCCTCTCCTCACTTCTGGCTGCAGAACAAGGGAGGAGTTTATCAGAAGATGATGACGAAGAGGAGTATGAGGAACACCATGGCAGAGGAAGGAGAGGCGAGAGTGAAGAGTCATTTGAAAGGCGATGGGATTCTCTTCGGCCCAACGCTTTTCAATCAGCTGCCGGCGAacggcagagagagagagcttattGCAGAGAGGGCGGAAGTTTCAGAGGAAATAGTAACTCCTTCCCTCTGCTGGATCCTGTGAATTCAATTAATCCTACAACATCTGAGCTGGATGACATCTTAACAGTCACTGAGACCAGCAAGGGGTTAAATTTCGAATACTTCTGGGAGAAGGCTCATGGTAGAAGGGGTTACAAACCTCTTCCTCCCCCTCAACCAATACCTACGCCCAGCTCTGGTCACAGGCAGTCTCTTGACACGCCCACAGTCGTTCCTGTGATCAGTGCTCGTAGCCCCTCATTAGCCAGCGAATACTACATTCGCCTGGAGGAGCATACCCCTCAGGATAAATCCCCTTCACTTAAAGGGAAAGCACCTTCATTACGAGCTGAATCTGTTAGTCCAGGGGATTTGGAGTTAGTAGAGCTTCGTAGTGGGAATTATGGAAGGGAAAGACCTGTATTTGGTCATCAAGACAAATTTGGACGAAGTGCTTCTCAGACAGTTCAGACTGTAAGGTCCAGTGAAGTTCAGGTACTGGTGCCAAACACAGGCCTGGCTGAGTTTAGTAAAGAAGGTTGCAGCAGAGTGACGGATTTTGCAGTGGTAGATATTGGAGAAAGAACAGAGGATGTTAAAAGAGATTCAAACCTGAGGTCATCTGGATCTTTATCTATCCAAGCACCTCGTCTTCCTCCAAAACCCCGCTCAATGTCTGCCTCATCGGGCACCCATTTACACTCACGGCCCTTACCTGTTCCTCCTCCAATATATCCTCGAGCCTACGGGCTGGGCCACTACCCTGGATCATCTTACCCTGTGGGAAAGCCTGATGCTTCAGATCCAATATTTCTGAGCAGCTCTTGTTCGTCAAAGGCCAATTTTGATCATTTAGGATTTAATCGCACACACCAGACACTTCCtccgtctccctctctctctccatcaatTCCCCCGTCCTCTGGAGGACCGCCCATGTTTCCTCCACCTCAGACCTGCCCTCCACCACTCCCCCCTCATTATAGACTTCAGAGAGGATCCTACCATCATTACTCTGGAGAAACATTCCCCAGACATAACAACTCTGCGGTGCACTTACAAAGAGACCCATTAAGCTGTGACTATGCTGACAAGCGAATCGCTGACAGAAGCTTGACGCGTTCGCAGTCCTTGCACAATTCGAGGGATGGCACAGATTCATACATTAAAGATGAGGAGTTGCCAATGGGCAGAGAATCATCCTATTGCAGAATGACTCGCTCACAGTCCACAGTTCCAGAGTTTGAGAGAAAGTCCTCCTCTAGCCCAGCATACTCAGAGGAAGATTATGATTCCCCCTTTATGTCGCCAAGCAGATCGAGCAGtggcacaaccattgaacacaTTATCCTGGCTGATGAGCCTGATCCTGCTACAAATGAACTCTTCTCCAGAGGAATGAAACGAACCCAGTCTCGGCTTGATACCATTCTCCCGGCCATCTGGAGGGAAGATGCAGAGCTGCATCGTGAAAGAGTTGCAGCAGCAATGAAATCCCCAATACACCTGTTTCTAACAGAAATCTCCAATGAACCTCCCGACTCAAACACGGGGCAAACCTCATGGGGCAAGGAAAGTAACAAGGAGAATGGCTTTCGGGGAATGCAACGCTCCCAATCCCTCCTAACTGAACTTGATTCAGCCTCTCAGGTTTGGGGGACAGACATGAAGTTACCGACTGGACAAGACAATGGCGCTAAAAAGAGGGATTTGTTTCTCACTGAGATTGACACAGCAGTGTCAGATTGTGAAGACGTATATGACGGAGATGGCGGAATCCCAGTGTCCCGCTTTGGAACCACACCCTTTCCATATGCACGTCCTCAAGACTTACCAACATatgcagaagcagaagaagcataTTCCGAAGGAATGAAGAGATCTCGCTCCCTGTTGTCTGATGTTACCATTGAGACTGAGCCTAAGAAAGAGGAAATGACGAGAGAAGAGTTTTTGCGCGAGATCCAATCAGCGGAGACTTTTCTAACAGAGATAATAACAAGACAGCGCAAACAAGAGGAAAACCTGTCACCTCCAGCAATATCACCCGAGTATGAGACCATATGCATTGACCCTGAATCCTCACAAACGATAAGATTTGAATCTGAACGATCATCAGGAACGTCCACAGGTGAAATGAAAGAGGCAATTTATGCTCAAGTTAcgaaaagtgtaaaaaagagTGAAATTAAAGTTGCAGTTCGTCCAGAAATTCCTGTCTTGCAAATTGCATCAGACTTGCAAAACATCCAAATGGAGAAAATAACAGATTCTGATACTTGTCTAGAGTCAGACATGAAGCCTCAATGCTCTACTGACTTTGTTCCTTCAGGAATTTTGCCTAAATCAGGGCTTCTGATGGACCAGACATCTCCTCATTTGACAGAGAGAAAGGATGCTGAGCTAACAGACAGTGAAAAGGATACTTTAGAGTCCTTTGATGTCTTAGTACAATCTGGAAAAAGAGCAGAACTGTTTGGACAGAGTGAAATTCAGGCTAAATCAGAGCAAACCTCAGTTGAGGGCATAACCAAAACTAATGATCAAAGTCAGATACCTCAGACTTATAACCTTGAGAGCATTAGTGCAGTTACTAAAAAAGGTGAGGTCAGTCCAGTTGGACATTACTCTGAGGTTCAAAGTGATGATAAAGCCGAGAGTTATGAACAACTGTTTTCAAAGTCAACATCTATTGATATTCCTGAACATTCCAACTTATTAAGTACCAATGCCCCCACAACTGAGACTGCCACAGTTTCATCAGTTGACAGAAAAAGACTAGAATCCCCTCAGACTAAGCCTGAGGTCTCACAAATGAAGAAATCTCCTTCATCCAGTGAGCAACCAGATTATACTGAAAGAGACAAAACTttaaatatgatatatgattCATTTGGGAACATAGAAGATGTTTCAAAGAATTTGACTTCAAGGTCTGGCATGGATGCCTTCCCATTTCCTTTGGCAAGGGAACCAAACTCTGACCAGTCCCTGTCTACTATGACACCCACAGACTCCACCATGTCACCTCTTACCTCTAGTTCTATGGACTGCCTTACACCCGGAGACTCATGGACTGCTGCAGGAGGCTCTGGCTGGAGGGTTCTTGGAACTGAAACTCCTCACCGAGATTCTGCCTATTTCTCAGATAGTGATTGGGATGCTGGTGAGGGTTTGCCCCGAAGAGGGGGTGACGGACTGTGTTCTTCTCGTCCTAGTAGTGGCAaagcaggagagagaggaggaataCTGATGGGAATTGAGGAGAAGACTGAAGTGGACGATGATGGTCTAATAGGGCACAGAAGTTTGGAAAGCAAAGGCCAGGTTGAAGaattattttcagaaaaaatgATTATGAGGAGATCAGGGGATGGCATAGAAACAATAGAGGTTAGCATTGCTGAAAAGAGTCTCAAACACTGTGATGACAAAAGTGAATTGAGTGTTTCAGGTGACTCAAAGACTCAAAAGAGCATTGAACAACTTGACAACTTGCTCTCAACTATAGATGATGAGCCTCTGAAAGGGTTTCCCTATAAAAGTGGCTCACAACTTAGTTTCCAAATGTCATCCTTTGGTGATCCAGGCCACAATTTGGGATTAGCCCCAATAATAATACTGGAACCTGTAGAAAAATGCACAGTGGAGGAAGTTTTAGATTCTTCACAACTAAATGAAAAGCAGATACAAATACCTGATAGTAGTGATTCCAAGCCACCCCAGCTTTACAGCTtccagtcagaaacttcacaaTCCTTCACTAGCATCCAGATTAATAACAAGTCCTGCActggagacacacagtccaTTTTAACGCACTCCATCTGGTCTGAGACAAATGAAGAAGACATGTCAAAAGCAAAAAGGCGGACATTAGATGTACAAGAGGTAGATACCAATGAACTGGGCTTGAGAAATCTGTCTTACACTGAAGAAAGTGAACAGGAACATGCAAAGGAAGAGTCTGAAAATGAAGGGCAGCTAGCTGCAGTAGAGCTTTGCTATACAACCAAGAAATCTCCAACCACAGAGAGAGAACAGCCCATTCTAACAAAGACCTCAGAACAAGAATGTCTTCACAACTTTCTTGAGGAACCCTCAAAGGGACATGAACTAAAGGCCAAAGAGTTGTGGAATGCTCATAATGTTGAAGGCACAGCTGAGTGTCTGATGGGAGAATTTGATTGCCATCGATTCCAGCAAGGAGATCTTCCCGTGTGCTCAGCTGAAAATGACCAGTGGGCATCTGTTGACAATGAACAGTGGGCAACAGCTGAGTTTCAGAGGTCTGAAAGAGAATTAGGGTCAGAGTTCTTTCCAGCATTTGAACAAAACAAGTGTGCAGAGGGAGAGCGATTGGTTGCAGGCTGTGAATTTTGGGATGAAGAAGCGAATGATGAATTAGCTAAGAGTGAGCCTCATCCTACCATGCTGAAGGCTTTTCAAAATAGATGCAATGACGAAGGGCTAGAACAAGCCAATTTTTCCAAGCTGTGCACTACTTCCACTTCTAGTTGGGTTCAGCAGGCTCCTGAAACTCATCAGACACCAGCGCAGAATATAGTagttaatcaagaggaaaacaTTGAGAATCCTGACATGGAAAATGGAGAGCTAGAACATGaaaagataagacaagacaagacaaatgtCAGAGAAAGCCAAGAAATGCACTGCTTCGAAATGGAGGTGGATAATCTGGAAAACCCAGAGCAAGAACTACTCCCTCAGGTTAATGGAGTTGAAATAATGAGCTCCACCAGTGCTCCTGGTTCTAAGTTGGACATACAAAATGAAGCAGATGAAGAGGAATGTCTGGCCCCTGAAGGGAATCAGAACTTCAACAGACTGCCAAACATCCTTAACATTGAGAATGAGGCAAGACAAAGAGACTGTGTAGAGAGTTTTAAAGGTATGAACATTCAAAATGAATCCACGAAAGCATTTCAAACTGAAGAGATAAAGACTTTGGAAACATCAATTCTGGCTGTCACAGCCAATACCGCTCTTGAACCTCACTTAACTGCAGAATACCAAAACAGTTACCACAGCCAGGATGCACAGGATATTGAAAATCACTGCCAGACAACAAAAGGAGGAATTGAAGAGCTTATAATTTCTGAAAAAGATAAATCAGATTCTCTTCCTTGTCCCAATCTCACAGTTCACACTGAAGAAGAACCCTGCACAGTCCATACTGGCAATGTACAGTGCTGCACTCCTGCCTTTGTGTCTATGGAGCTTTCAGACTGTGATGCATCTCAGCATGCAGAGATGAATGAATGCCAAGGCCCCAGTAATTATCCAAACACAGTGCACCATATAGAGATTAAGTCTAATGCAAATTTACAGAGCACAACCGACCAAGTCATAGACCACGAAAGCTTATCGTGCTTTTCCAATGATGCCGATTCTTTTGATCAGCCTGAAAAAGAACAGTCAACAAACACTCATAGCAAAGGGATTACAGCGAACTTGGGACAAAAAACGCATTTGTCAATAATTACTGAAAGTCAGACACACTCAGTGTCAGACTGCATCAGTGAGAATGACAGAAATAGCACATCTCGTCCTCCAATCTCTCAGTGCTCCTTAAACTCCATCCCAGAGTTGCTGATCTCAGAGTGGAAGGATTTAGATGAAGAGCCCTTAGAGGATTTCGAGAAGCTCGAGAAGTTGTGCTGCATTTCTGGAGATGAAGATATTCTTGGAGATCTCTTCCTAGAAAATTTGGAGCTGCTTGAGTCTTTGAAAAAGAGAGCCAGCACAGAGGAGGGCCAAGACAACTCTGGGACTTTACAAGGCAAGACAAGAGTTGAGCTAAGGGAAGAGGTTGATGGAATCTCCGATATTTCCACAGCAAAATCACAAGACTTTGAGCAGAATGACAAGAAGGGCTCTCAGCTTTTACTGGAAAAGAAGACAGGAGATAATATGTCATCAGATGTTTCGCCATGTCATTCCATCGATGCTACCAAAGGTCAACGGTCATTGTCACAAATGCCAACAAAAAATGGACTAATGATGCAGGTTTGTGAAGAGAAACTGCAGTATTCTCTCAGTGAGAATGTCAAAACCAATGTGCTCTGGGGATCTGCCCTTACTGACAGCGTCATTCTGCGTCCTTGGGGTGACACCAACCTCTGTGCTGAGAATGATGCAGGCAGCGAAAACGTGTCCATGGAAACTGAGAGTCTCTGCAGTAAAGGCGAAGCAGTCTGCTCTAGCCCTGTGTTATCTAAGAGTGAAGATGCTGAAGAAGAAAGTGAGATGCTGACAGTGATAGAGCAGCCCGAAGTGACACCTGCCATGCCTGCTACAAATCAAGCTATGAAAGCTAAACTGGctcgtctctctctttccctccctccgcTGGAACtttcgctccctctctctcccggCCCCAAAGGAGGATTCTGGGACAGGACTGACCACAGAATTGGTCGCAGACGGGGAGTTTCGAATGGAAGTGATCCTGAAGAAGATGAggaggaagagcaagaggatGAGTCATCCAGAAAAGTTATTGTCATCACGGAAACAGATGTTCACAAGCGAGTAGGCCTGAGGAGCTTGCTAAAATCGCCCAAGGAACCCTTGGACAAAGAGAATCGTGATCACGGAAGAAATGTGTCCTTttttgatgatgtcactgtctatCTTTTCGATCAGGAAACTCCAACTAATGAGCTGAGTTCTGGCTCTGCACCCACGAGCCCGTCTCCCCTTGGAAAGCCTGCTCACTTCGATGGACTTGGAAGCAGCAATCACAAGACCAGCAAGAACAAAGACCACATAAAGCCAAGGTCTCCCACAGGTGTCAGTTCAGTCCCACCATCACGCTTCACCGTCAGCCCTGCCAACGACCCACATTTGGTGTGACCCACTATTCCTTCCTATACACCTGGAGAAAATGTAGCTCTCTGGAGTGACAGAGTTTCTCTGTGGTCATCGTGAAGCACGGTGGCTTCTGgaggttatttttttaaatcaggctAAAGACTCCTGTTTTCAAGGCTGGAGGTGTTCCAGGTTTTACTTTGCTGCGGGAGCAGGTCCGTCCTGTGCAAAGCAGGAACCTCTACAGCCACGCAGCCGGGAGCTATGTAAAATCTGAAATGGAGTTTACGGCTATGCAACGGGAGTCTTATTGTGTACCAGCTTAACTGCTCTATTTTCATGGCTTCTTGAAGTACATTTGTATTCTGATCCTCTTCCACACAAGAGGAAGCACTTTCTTTGACCAGTACCTGTCTATTTGTGAGCTCGAATAGAAATATTGCCATTGTAAATTTGTTCTCATTGCAGTCAAACATCCTCGTAGGCTTGAGAGGGAAATCCCACCCTCCCTATCTAACAGTGCAGTGCTCTTTTAGTATTTGTACAAATGGATAGTGAATTTACTGTACAAACtccattttaaaaccatttattttagATGTATTGTTAGAACGCACGACACAAAATGAACCTGCTACCTACTgttatgttttatactgtattttttattgcaaattgttgtttgtttctgtatttctgtttacTTCAttgtgtatttaattatttatttatttatttactgtacgaCTGCAACAATTGCACAATTACTTTGCTTTAATTGTTTTTGGATGCTGTGCATTGTTGAAATAAGTTGCTTCATCCatctcattaaataaaaccaGATATTTCCATAAGTATAAATgctttgaaatattttatatcatttacCGATTTCTAGATGTTAGTCTGTATCTATTTGTCATTTACTGTGtctgtttataaatgttatttttaactgtgtatttgacATGTTCTCGTCATTACTTACATTCAAAGCAATTACTGTTGCTAAGCATGGAGGAAAAATGAAGGCAGTGCACATGTCCATGAATTGATCTGTTTATTCAACTTTAATTTGATGATCAGTGATTGGTGTCGAAGGTGAATCAGAACATTTGTAACGTCGCTTTCAGCATCTGTTTCATTGCGAGGTTTCTTGAGGAGGTTCTGGGTAACCAGGAGTggtaaaaaacaaagacaaaaaaataaaacaaaacgaATAAAACTAAATCACATGGAGACTGTGAAACATTTAATGAATTGTTTGATGAAAATAAATTGTACTGGCTTATAATAAA

Function

GO:

id name namespace
GO:0016301 kinase activity molecular_function

KEGG:

id description
K08899 LMTK3; lemur tyrosine kinase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124376 lncRNA upstream 187965 21406031 ~ 21446986 (+) True G92489
TU124231 lncRNA upstream 545148 21086591 ~ 21089803 (+) True G92380
TU124227 lncRNA upstream 551202 21080592 ~ 21083749 (+) True G92378
TU124192 lncRNA upstream 628471 21000833 ~ 21006480 (+) False G92358
TU124419 lncRNA downstream 40991 21700828 ~ 21701423 (+) True G92525
TU124428 lncRNA downstream 107857 21767694 ~ 21811157 (+) True G92532
TU124431 lncRNA downstream 117499 21777336 ~ 21777770 (+) True G92535
TU124438 lncRNA downstream 130265 21790102 ~ 21791994 (+) True G92538
TU124432 lncRNA downstream 135695 21795532 ~ 21803014 (+) True G92536
XM_007254499.3 mRNA upstream 1063 21628732 ~ 21633888 (+) True leng1
XM_007254498.3 mRNA upstream 38029 21518165 ~ 21596922 (+) True rspo2
XM_022673753.1 mRNA upstream 123864 21464674 ~ 21511087 (+) True LOC103041380
XM_015605864.2 mRNA upstream 372794 21253476 ~ 21262157 (+) True LOC103043722
XM_007249645.3 mRNA upstream 425073 21205967 ~ 21209878 (+) True taf12
XM_007254508.3 mRNA downstream 433 21660270 ~ 21669327 (+) True prpf31
XM_007254503.3 mRNA downstream 25704 21685541 ~ 21698150 (+) False LOC103043132
XM_022673755.1 mRNA downstream 26188 21686025 ~ 21698150 (+) True LOC103043132
XM_022673756.1 mRNA downstream 32224 21692061 ~ 21698150 (+) False LOC103043132
XM_022673757.1 mRNA downstream 43754 21703591 ~ 21720171 (+) True LOC103045162
TU124348 other upstream 282948 21269165 ~ 21352003 (+) True G92462
TU124346 other upstream 282948 21275163 ~ 21352003 (+) False G92462
TU124347 other upstream 282948 21275163 ~ 21352003 (+) False G92462
TU124179 other upstream 689445 20941426 ~ 20945506 (+) True G92350
TU124129 other upstream 813561 20819150 ~ 20821390 (+) False LOC103032252
TU125154 other downstream 3038296 24698133 ~ 24708374 (+) True G93079
TU125228 other downstream 3254852 24914689 ~ 24965444 (+) True G93135
TU125312 other downstream 3652040 25311877 ~ 25313707 (+) True G93185
TU126114 other downstream 5288626 26948463 ~ 26948879 (+) True G93753
TU126349 other downstream 6259757 27919594 ~ 27939020 (+) False LOC111193309

Expression Profile