RNA id: XM_007249645.3


Basic Information

Item Value
RNA id XM_007249645.3
length 1461
RNA type mRNA
GC content 0.43
exon number 6
gene id taf12
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 21205967 ~ 21209878 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTCCGCTGTTTAGGGCTGTGGGATCCGGTCTGCTGTAGCTTTAGCTGCCGCATCAACGGTGGCGAATGGAGGGGCTGTAATTTGCctgtttttcttaaattttacaCTTGATTTGGGCTTTTACTCGGATGATGAGGAAATAATACACCCAGttAAACAGAGGTGACTGCAGCCTTATAGGAGGCTATTGACTGCTGTCTGTTGCTTGGCATGAACCAGTATCAACAGCAGACCAGCAGATTCAACTTGTACAACGCTGCCAAAGCGGAGGCCTCCTCAGCTTCATCCCTTACCAGCAGCATGGcaaacagcactgctgtaccCGGAAAGGTGTTGGGCACACCTGGGCCTGCTGGCAGACTGAGTCCTGAAGGAACTCAGGTGCTCAGCAAGAAGAAACTGCAAGACCTTGTGCGGGAAATTGACCCTAATGAACAGCTTGACGAGGATGTTGAGGAGaTGTTGCTGCAAGTTGCTGATGACTTTATAGAGAGTGTGGTGACTGCTGCCTGCCAGCTTGCCCGACATCGTAAGTCTAACACACTGGAAGTAAAGGATGTGCAATTGCACCTTGAGCGCCAGTGGAACATGTGGATCCCTGGCTTTGGCTCAGATGAAATCCGACCATACAAGAAGGCATGTACCACGGAAGCACATAAACAGCGAATGGCTCTGATCCGCAAGACGACCAAAAAGTAGCAAGACTGAGAAGACCAAGATatttttcactcgttttttgCTCATTGGGTTGCCCTCTGAGGAGAACATGTGACTTTTGGAAACATTGCAGTTGGGGGGAAGCAAGCAGGCCTTCATATCAATAGCAGATAAATGCACTATTGTCTAAGTGCTactaattttttacttttacagacATCAGAAACTACCCGAATGGTTGCTGTTATTAGGCTGTCATTAGTATGCTTTGTGCTTGCCATGATTACAATAGGCTGTGCTGTTATATAAGAGCTATAATTGAACATCTTAAATGTTGCATGAAACACATGAAGATTTGATCCGATCACTCACTGTgggcatttgattttttttttatatgtataaataatgtatatctGCATATTTATCATTACAGCCTGTTATTTCTCTCGTTCCTTTAGAATCCATTTGATTTTCTTTGGTAATCCATGGTGTATATTATCCTGTAGTGTTGAATAATACTGGGCAGGGTGTTAGGCTTGTGTTTGATTTCTAATTGAGATGCACTGTGGTGCTATTACAGAATTTGCGACATAGTTAGGCTAGACAAATTTGTGGCACAAAACATGAAGGATTGTGCAGCAAACGTTTtgttgttttccttaaagtataTTGTATCTGCAACATTATGTCagctttaaacattttttttcacacattctTGCTCCATGTCTCACTGTGCAAATCTGTAATTGAGTTTCTGGTGCTAAACACTCACTAATACACTGAAACGAAGCCACTA

Function

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006413 translational initiation biological_process
GO:0005669 transcription factor TFIID complex cellular_component
GO:0003743 translation initiation factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K03126 TAF12; transcription initiation factor TFIID subunit 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124231 lncRNA upstream 116164 21086591 ~ 21089803 (+) True G92380
TU124227 lncRNA upstream 122218 21080592 ~ 21083749 (+) True G92378
TU124189 lncRNA upstream 199487 21000833 ~ 21006480 (+) True G92358
TU124376 lncRNA downstream 196153 21406031 ~ 21446986 (+) True G92489
TU124419 lncRNA downstream 490950 21700828 ~ 21701423 (+) True G92525
TU124428 lncRNA downstream 557816 21767694 ~ 21811157 (+) True G92532
TU124431 lncRNA downstream 567458 21777336 ~ 21777770 (+) True G92535
TU124438 lncRNA downstream 580224 21790102 ~ 21791994 (+) True G92538
XM_022673749.1 mRNA upstream 1003 21196508 ~ 21204964 (+) True ctps1
XM_022673750.1 mRNA upstream 1003 21197129 ~ 21204964 (+) False ctps1
XM_022673748.1 mRNA upstream 87769 21104780 ~ 21118198 (+) True LOC103036967
XM_007249631.3 mRNA upstream 285173 20902197 ~ 20920794 (+) False LOC103035107
XM_007249630.3 mRNA upstream 285173 20902198 ~ 20920794 (+) True LOC103035107
XM_015605864.2 mRNA downstream 43598 21253476 ~ 21262157 (+) True LOC103043722
XM_022673753.1 mRNA downstream 254796 21464674 ~ 21511087 (+) True LOC103041380
XM_007254498.3 mRNA downstream 308287 21518165 ~ 21596922 (+) True rspo2
XM_007254499.3 mRNA downstream 418854 21628732 ~ 21633888 (+) True leng1
XM_007254501.3 mRNA downstream 425071 21634949 ~ 21659837 (+) False LOC103042418
TU124179 other upstream 260461 20941426 ~ 20945506 (+) True G92350
TU124129 other upstream 384577 20819150 ~ 20821390 (+) False LOC103032252
XR_002650449.1 other upstream 2592250 18604038 ~ 18613717 (+) False LOC103028566
TU123412 other upstream 2713895 18491680 ~ 18492072 (+) True G91760
TU123391 other upstream 2784704 18417609 ~ 18421263 (+) False G91748
TU124348 other downstream 59287 21269165 ~ 21352003 (+) True G92462
TU124346 other downstream 65285 21275163 ~ 21352003 (+) False G92462
TU124347 other downstream 65285 21275163 ~ 21352003 (+) False G92462
TU125154 other downstream 3488255 24698133 ~ 24708374 (+) True G93079
TU125228 other downstream 3704811 24914689 ~ 24965444 (+) True G93135

Expression Profile