Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU124189 |
| length | 578 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 2 |
| gene id | G92358 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035906.1 |
| NCBI id | CM008309.1 |
| chromosome length | 35377769 |
| location | 21000833 ~ 21006480 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0031667 | response to nutrient levels | biological_process |
| GO:0009991 | response to extracellular stimulus | biological_process |
| GO:0004982 | N-formyl peptide receptor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU124182 | lncRNA | upstream | 50425 | 20947197 ~ 20950408 (+) | True | G92351 |
| TU124181 | lncRNA | upstream | 51299 | 20947197 ~ 20949534 (+) | False | G92351 |
| TU124172 | lncRNA | upstream | 72212 | 20925458 ~ 20928621 (+) | True | G92343 |
| TU124156 | lncRNA | upstream | 126065 | 20874077 ~ 20874768 (+) | True | G92335 |
| TU124147 | lncRNA | upstream | 139897 | 20850270 ~ 20860936 (+) | False | stk40 |
| TU124227 | lncRNA | downstream | 74112 | 21080592 ~ 21083749 (+) | True | G92378 |
| TU124231 | lncRNA | downstream | 80111 | 21086591 ~ 21089803 (+) | True | G92380 |
| TU124376 | lncRNA | downstream | 399551 | 21406031 ~ 21446986 (+) | True | G92489 |
| TU124419 | lncRNA | downstream | 694348 | 21700828 ~ 21701423 (+) | True | G92525 |
| TU124428 | lncRNA | downstream | 761214 | 21767694 ~ 21811157 (+) | True | G92532 |
| XM_007249631.3 | mRNA | upstream | 80039 | 20902197 ~ 20920794 (+) | False | LOC103035107 |
| XM_007249630.3 | mRNA | upstream | 80039 | 20902198 ~ 20920794 (+) | True | LOC103035107 |
| XM_007249627.3 | mRNA | upstream | 139898 | 20839975 ~ 20860935 (+) | True | stk40 |
| XM_022673743.1 | mRNA | upstream | 166337 | 20822678 ~ 20834496 (+) | True | oscp1 |
| XM_022673748.1 | mRNA | downstream | 98300 | 21104780 ~ 21118198 (+) | True | LOC103036967 |
| XM_022673749.1 | mRNA | downstream | 190028 | 21196508 ~ 21204964 (+) | True | ctps1 |
| XM_022673750.1 | mRNA | downstream | 190649 | 21197129 ~ 21204964 (+) | False | ctps1 |
| XM_007249645.3 | mRNA | downstream | 199487 | 21205967 ~ 21209878 (+) | True | taf12 |
| XM_015605864.2 | mRNA | downstream | 246996 | 21253476 ~ 21262157 (+) | True | LOC103043722 |
| TU124179 | other | upstream | 55327 | 20941426 ~ 20945506 (+) | True | G92350 |
| TU124129 | other | upstream | 179443 | 20819150 ~ 20821390 (+) | False | LOC103032252 |
| XR_002650449.1 | other | upstream | 2387116 | 18604038 ~ 18613717 (+) | False | LOC103028566 |
| TU123412 | other | upstream | 2508761 | 18491680 ~ 18492072 (+) | True | G91760 |
| TU123391 | other | upstream | 2579570 | 18417609 ~ 18421263 (+) | False | G91748 |
| TU124348 | other | downstream | 262685 | 21269165 ~ 21352003 (+) | True | G92462 |
| TU124346 | other | downstream | 268683 | 21275163 ~ 21352003 (+) | False | G92462 |
| TU124347 | other | downstream | 268683 | 21275163 ~ 21352003 (+) | False | G92462 |
| TU125154 | other | downstream | 3691653 | 24698133 ~ 24708374 (+) | True | G93079 |
| TU125228 | other | downstream | 3908209 | 24914689 ~ 24965444 (+) | True | G93135 |
