RNA id: XM_015605864.2


Basic Information

Item Value
RNA id XM_015605864.2
length 3173
RNA type mRNA
GC content 0.41
exon number 11
gene id LOC103043722
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 21253476 ~ 21262157 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAAGGCATTGCTGAAAGACGTGCAACAGTTTTGTGAAACTCGTGCGACCGGTGTGTGTGGATCGCGTGCGAGGCGCCGCTTCTCGTGCCAGCGCTCCAGCTGCCTTCGCGCAGGAAGTGGAGCGAGACGACACGACGCATGCGCACTGCGACCGACCAGCCGACGATGCGCTCGGCTCGGtggaaaagaaaagaggaaaagaagaagaaaagTGTTGAGTGACCACAGTAACCAGAGCGTTGTGATCACAATGTCGGTGGGAGACGTAGTGAAGATAAAGGAGGAGGAAGATGTTCATTGTGATGGCCATAAGACTCAGCTCATCCTGCACCTTCAGTCTGTTTCCCAAGGGACAGAGGAGGAAAGAAGTACAACTGTTTTGGCTGTGGAGACTCAACAAGACGACAATTCCGAGGGAGATGAGGTTGAATATGGCTATCCAATCACCTGTGGTGACAGCAAGGCAGTTCTTCTGTTTAAGAAGTTTGTATGTCCAGGAATCAATGTCAGATGTGTTAAGTTCAATGATCAGCTTATTAGCCCCAAGCAGTTTGTGCACCTGGCTGGCAAAGCTACACTCAAGGACTGGAAGCGAGCCATCAGGCTTGGAGGAGTAATGCTCAgaaagaTGATGGACTCGGGCCAGATTGATTTTTACCAGCATGAGACTGTGTGCACCAACTCATGCCGCAGCACGAAGTTTGATCTGCTAATCAACAGCACGCGACTGACACAGGGTGTGCAGCAAACACCATCCTCCCCAGTTATGGGACAGGTAAGCATTGGAGAGGAGATGCCTGACGAAACTGATAGTGATGTGGGTGACTCCTGGCCACCTCAAGAAATGCCAGCTGCAAACAACGAAAATGTCAGAATGCACACAGAGGAGGTATCTGATGAATCTTTGAATCTGTGGAAGGGCATTGCTGAGATGGGGCTGATGGGAGCAGTGGTATCCACTATTCGCTCAGAGCTGCTGGCCATGCTGAGTGAAGTAGAGCGTCGGAGTGAGCAGGCTACCCTGCAAGAGTCAGATGCAGCAGCTCTGAATACGCTGACTCGGATGTTTGGGCTACTGGATTCAGTGAGGCAAGTCTTGGATCTACAGCGAAAAAAGACTGATGAGAACCAGCAGCACATCCATGACACACTCAACGTTCTTTCTGACCAGCTTAATAAGCAGAAGACAATGCTTGGTGTGTCCAAGCCCACTCCAATCGAGCGACCCAGACTGCAGCGGCCTTCCTCCACCAGTGTGCTGTCCTCTTCACCATCACCATTCACTGTCCTCTCTCCTATCACACTTGCCTCATCCAGTCAGCCTCTGACAATGGCTGGCCTGCCAGTGGCCATGCTGGCCCAGTTGCCCTCTGGCATCCAGCTGCTCCCTCATCACACCAACAGCACTGCGAGCAGAGCAGGGGCTATGACTGTAGCATCCCCCAATGGGCTCACAGTGCTTGGCACCGGTTTTGGGGATGGGACCTCTGCAATAGAGGTGCTTCACCTAAAGGGTGAGGGAGATGAGGAAGATAGGGTGTCAGTACTAAGGCAAGATACTGGAGACTGGAGTGGCAGACAAACAAAGAACACAGCGCAGGAGAGCAGAGAAACAGGTGATGTAGAGAGAGTTGTTGGTAGTGGAAAACTTAGCAGAAAACGGAGAAGGAAAAgtgaaacttattttttttatacagagtGATACAGTGCTATAAAAAGGAAAAGATcaccttttattttgtttatttctagttaaaAAGGGCATCAAATGCAATTTCATTTAAGTGTTATTTTGGAACAGATAAGAAAATCCACTTAGATACGGAAGTGGAAAGTTATTGTTATGAAGCAGAAAATGAGCTCAACTCTAGATCTGGAAGAAAATTGTTTTTGTCTGTCCTTCCAAGGATGTAGAGCTTGCAAGATATCTTTACTAAGATATTTGCAAATTAAATTGCTGAACTACCCCAGATTCCAGATCTTGATACCCCTAGATTCCAGATAAgtattaatgtgtttgagatgaCGTGGATGCTTGAATTCAGAAATTACTCATTCTACTTACAAAACAACCATATCCTTTGTTACAGAGACTAAGGATAAGGGGAGTGTAAGGTTTCCTGCCtcttaaaaaatctttaaaaatgtatagtgGCAATGTTTTgaatggaaataaaatcaattaatgGTGTTGTCCGACTTTTGCACAGAACTGTAGACAGTTAGATAGAAAGAGTAATGTTTTATGATTGGCCATTTTATTTGATATCATCCTGTAGATGGTTATAAAGTGTATAAGATATGCAAGATATAAATGTAAGGAAAccatgtttagtttagttttaggtttaTTTGTTGATGCTGTACTTGTGTTGTCACTGTTGCTCTGCTGTTAACTATTTAAAGTTTCGTTGTTTTATCATGTACCTTAATTTTtatctgttctgttctttttaaatgtgcttGAAAGACATTAGAAATCTAGCAGTATTCATGCGTCTGTTTGCATAAAGTTGTCTGGCTTTAGCTGACCAATCCAACATACATGTACAGTTTTCAATAACAAGGAAAGATACAAGGAAAGAGAATATTACTTTCTGTGCTAAAACCTTTCTGATCTCataggaaaaatatttttataatctgTGTTTATAACTTTGGCTTTGTATCAGTGTACAACTACACTTCAACTTTAATGGATTTAGACAAAAATAGTCACATATTGATATTGATGGATtctattttactatattattattattattattattattattattattttctgtaaataggTTTGACAGATTTCATTTGTAAACCTGGTTTATAGCATCAAATGAAATAGGTTATATCTTATGTTAAGTCTACCCTTATATCTGATGTGTCTAGAAACTGGTGCTAAATATACCTCACTTACTTATAATTAAACAAGACTTTGTCACTGGTTTTGGAACCCAACTTTACACTTCTATTTGATTTAATAAGCAAGTAGCATCTTGtaatgttataaaaatataatagaatCCCGTTAAGTTGTGTGCACATGTAGCAGTTATATTTCTACTGgtaaaagttactttaataTTTGTACAACAATGTAAATACAATAATGTTTTTATGCTATAAAagcatgtaaataaaattatactgtAATTTGCAGATACTACTGAA

Function

GO: NA

KEGG:

id description
K24505 GMEB; glucocorticoid modulatory element-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124231 lncRNA upstream 163673 21086591 ~ 21089803 (+) True G92380
TU124227 lncRNA upstream 169727 21080592 ~ 21083749 (+) True G92378
TU124189 lncRNA upstream 246996 21000833 ~ 21006480 (+) True G92358
TU124376 lncRNA downstream 143874 21406031 ~ 21446986 (+) True G92489
TU124419 lncRNA downstream 438671 21700828 ~ 21701423 (+) True G92525
TU124428 lncRNA downstream 505537 21767694 ~ 21811157 (+) True G92532
TU124431 lncRNA downstream 515179 21777336 ~ 21777770 (+) True G92535
TU124438 lncRNA downstream 527945 21790102 ~ 21791994 (+) True G92538
XM_007249645.3 mRNA upstream 43598 21205967 ~ 21209878 (+) True taf12
XM_022673749.1 mRNA upstream 48512 21196508 ~ 21204964 (+) True ctps1
XM_022673750.1 mRNA upstream 48512 21197129 ~ 21204964 (+) False ctps1
XM_022673748.1 mRNA upstream 135278 21104780 ~ 21118198 (+) True LOC103036967
XM_007249631.3 mRNA upstream 332682 20902197 ~ 20920794 (+) False LOC103035107
XM_022673753.1 mRNA downstream 202517 21464674 ~ 21511087 (+) True LOC103041380
XM_007254498.3 mRNA downstream 256008 21518165 ~ 21596922 (+) True rspo2
XM_007254499.3 mRNA downstream 366575 21628732 ~ 21633888 (+) True leng1
XM_007254501.3 mRNA downstream 372792 21634949 ~ 21659837 (+) False LOC103042418
XM_007254500.3 mRNA downstream 372794 21634951 ~ 21659837 (+) True LOC103042418
TU124179 other upstream 307970 20941426 ~ 20945506 (+) True G92350
TU124129 other upstream 432086 20819150 ~ 20821390 (+) False LOC103032252
XR_002650449.1 other upstream 2639759 18604038 ~ 18613717 (+) False LOC103028566
TU123412 other upstream 2761404 18491680 ~ 18492072 (+) True G91760
TU123391 other upstream 2832213 18417609 ~ 18421263 (+) False G91748
TU124348 other downstream 7008 21269165 ~ 21352003 (+) True G92462
TU124346 other downstream 13006 21275163 ~ 21352003 (+) False G92462
TU124347 other downstream 13006 21275163 ~ 21352003 (+) False G92462
TU125154 other downstream 3435976 24698133 ~ 24708374 (+) True G93079
TU125228 other downstream 3652532 24914689 ~ 24965444 (+) True G93135

Expression Profile