leng1


Basic Information

Item Value
gene id leng1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 21628732 ~ 21633888 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254499.3
CTACGGCCTACGTAATGTACGTGATGACGCACTGTGACGCTGGGCTGTGTGCTGTGAAGCGAGGACTAAACGAagattcatatttcatattatttcttaaaaaaaaaaacactttaatttgtTTACAAACGGTTTTATTGGGCTTTATGGGCGAACATGACTCGAGAGTGAGCGTGGTGTACACACAGGAGACCCGTGTGGAGCAGACTGGATACGTTAGCTTAGCCTCGCTTAGCCGGTTTGTTTTGGTCGCTTGTGGTGAAGAGAAACAGTAAaactgtagaaaataaaaatatttaaagagtcAGATGTTTGTAAGGCAGTGAAACGTGGACGCGGTATATTGTTAACGGTGGTATTAAAGTCTTAAGGTCATTAATTTCGCTGTGTATAAAGTTTTATCCAGTTAAAAACACGCAAATATGAATATTCTTCCAAAGAAGAGCTGGCACGTGCGCAATAAAGACAATATAGCGCGCGTGCGGCGGGATGAGGCTCAAGCAGCAGAAGAGGAGCGCGAAATCCAACGGAGAGCAGAGCGCGCAGAGCAAGAGGCTCGAACAGACTTCCTAAGGAAGAAGTCTCGCATAGCCCTTGAGCAAAGAGGAGTAGATAGAGTGGATGAAGAGCAGAGCCGAGGTTCAAGCGAGATTGAGCAtctgaacttgtttcctttggaGGACTCTTCAGAAAAGAAGGGAAATGCAGAATATctcagagaaaaaaaggaggagAAGGAGAAACAGGAGCGTGCAATTGGCCTGTTGGTGTCTCTTGGTCCTGTCCCTGGAACTGAGGCCACACCCTGGTATCtaaaacagagagaagaaaaggagaaggaagaaaaggagaaagacaAAAAGCCAAAGGATTTAAGAAAAAGCATAacggaggaggagagagagaagaaagatcGGAAGTTAAAGGAGAGGCTCGACCCTTTTATGGACATGAAAAAAGCCCTTGCAGtaaaagacagaaaagagaaaaaacacaagaagAAAGATAAGAAAGATAGAGGGGAGAAGAGGAGTGGTGAAAGCTCTATTGAAAAGCTGCGTGCTGAACGTCTGCAAAGAGAACAGGAGGAGAGGAGGCGAGCACAAGCACTGCTGGATGAGAGGAGCggagtggggaaaaaaagagaagcagaGAAGGAAATGGGGGACAGAGAGAGACCGTACCACAGTGCCTATTTTCCTGAGCTGGCCCGGAAAAGACAGAGAAGAGACAGAGACTATTCTGGCTTCTGCTAGCTTTCACAGTAATCTGTGGATACAGTTCAAATGGAGTCAGGATAAGCAGAGAGTATTGAAAGATGGTTCTTTCAATacttataaaaacacattgatTTTTCAATGTACTCTCTGTCAGATCTGTTGTTAAACTGTAGACCACTTGATGATCTCAGCTGGCTGCCCACATGCATGGCCTTTGTGATGGAAAGAGTTTGTTTAAGAGCCAGCCTGGATTTATGTGTAGTCAATTAAGATTGATAAGATGAATGATTGTCAAGATGATATCAGATTTCACTCTCTACAGTGAAATTAGTTTGGACTTTCTTTACTTCTAAATTCGGGACAGCTGTATTGATgagtttaaaaagataaaaaaaactttttaaattatgaggAGAGGTGGAAAGATAAGGTAACATAACATTAACAGTGTTTACCACAGGGACTGATTGCTGACCATGAATTGTGTAAACTGTTTTGGTTCTCCATGTGTTTAAAACACttctatttaattttgttgcctttttttatttgtgttcaaaaataatgattacatACCACAAAGAATATTACATTTATCAGTCAaagaaatacagtgaaatatttGCCATATTTCATTTTAGTATCTTCATTTAAAGCTGCTAATTCTTTTA

Function

NR:

description
PREDICTED: leukocyte receptor cluster member 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254499.3 True 1891 mRNA 0.41 5 21628732 21633888

Neighbor

gene id symbol gene type direction distance location
rspo2 rspo2,LOC107679648,LOC107755916,LOC107705839,LOC107600624 coding upstream 31810 21518165 ~ 21596922 (+)
LOC103041380 eif3e,eif3ea,LOC108434212,LOC107755923,LOC108441687,LOC107551184 coding upstream 117645 21464674 ~ 21511087 (+)
LOC103043722 NA coding upstream 366575 21253476 ~ 21262157 (+)
taf12 taf12,LOC107700725,LOC107705731,LOC107566933,LOC107755488,LOC107588503 coding upstream 418854 21205967 ~ 21209878 (+)
ctps1 ctps1,ctps1b,LOC108433599,LOC107704971,LOC106584221 coding upstream 423768 21196508 ~ 21204964 (+)
LOC103042418 lmtk3,LOC108410634 coding downstream 1061 21634949 ~ 21659837 (+)
prpf31 prpf31 coding downstream 26382 21660270 ~ 21669327 (+)
LOC103043132 sphk2,LOC103388269,LOC106605743,LOC106699615,LOC106577300,LOC103136634 coding downstream 51653 21685541 ~ 21698150 (+)
LOC103045162 si:dkey-283b15.4,cyth2,LOC108410633,LOC107559044,LOC107688991,LOC108268159 coding downstream 69703 21703591 ~ 21720171 (+)
LOC103046806 LOC108410646,LOC106605752,LOC106577252,LOC105018995,LOC108264199 coding downstream 113435 21747323 ~ 21767360 (+)
G92489 emc2,LOC107600623,LOC107666844,LOC107679651 non-coding upstream 181746 21406031 ~ 21446986 (+)
G92380 LOC108433596,LOC108271733,LOC108268173,LOC107705646,LOC107556089 non-coding upstream 538929 21086591 ~ 21089803 (+)
G92378 NA non-coding upstream 544983 21080592 ~ 21083749 (+)
G92358 NA non-coding upstream 622252 21000833 ~ 21006480 (+)
G92351 NA non-coding upstream 678324 20947197 ~ 20950408 (+)
G92525 NA non-coding downstream 66940 21700828 ~ 21701423 (+)
G92532 NA non-coding downstream 133806 21767694 ~ 21811157 (+)
G92535 NA non-coding downstream 143448 21777336 ~ 21777770 (+)
G92538 NA non-coding downstream 156214 21790102 ~ 21791994 (+)
G92536 LOC108410632,LOC108264157 non-coding downstream 161644 21795532 ~ 21803014 (+)
G92462 ptprub,LOC107705793,LOC107588504 other upstream 276729 21269165 ~ 21352003 (+)
G92350 sh3d21 other upstream 683226 20941426 ~ 20945506 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other upstream 767796 20839975 ~ 20860936 (+)
LOC103032252 LOC103032252,LOC108433590,LOC107755659,LOC107588526,LOC107700712,LOC107704880,LOC107705924 other upstream 807342 20818927 ~ 20821390 (+)
grik3 grik3,LOC100334689,LOC105019312,LOC106605119 other upstream 1016448 20357549 ~ 20612284 (+)
G93079 NA other downstream 3064245 24698133 ~ 24708374 (+)
G93135 NA other downstream 3280801 24914689 ~ 24965444 (+)
G93185 LOC105900568,LOC101883708 other downstream 3677989 25311877 ~ 25313707 (+)
LOC103034726 LOC108436089 other downstream 4633605 26267493 ~ 26392435 (+)
G93753 NA other downstream 5314575 26948463 ~ 26948879 (+)

Expression


Co-expression Network