smpdl3b (smpdl3b)


Basic Information

Item Value
gene id smpdl3b
gene name smpdl3b
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 20012775 ~ 20016592 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249607.3
TGGCAGTTATCAATCTAAGGTGTTtcagtaatatttaaaaaattgataTAGATAAGATTACTAAAAACTGCAGCATGGAACAGAGAATAGAACTGTGGACCATAAGTTGATGTTTATCAGATTCTATGATATAACAGGGAGTTTATTTAGatttcttaattaatttattcatttattttaattaagttgctattcttttttatcTAGTGCTTCTACTGGTGTTCAGATTAGGGTCGGAAACACTATCCAAAAATAACCTTCTGAAACACATACCAGCTAATTGCGTCCAACTTCCAGAGCTCGGCCAAAGTCCCCATTGTACTTTTGTTTAGGCTGTTAAATGAATGGAATTACTGTTATTCCTGACCAGTGATAAATAGATCATATATCAAACTTTCCAGTTTATAAACACTGATCTATAGTTCACTAGTTAAAAATCATCCTGATACACATGTTGGCATGGGTGAGTTCTGAGGTTCCAGTTGGCCTATCTTATCTTTCATTTTACTATCAGCTGACAACTGCATGCCTTTCCAGTTGGATAACACTTATTCCATATACCAAGACCGGCAGTTACAGCTACAGTTAAACGAGTCTCAACATGGACTTCATCTGGAAAGTAACCCTTCTCAGTGTTTTCACCGTCTCTGGGCAAGGCAAAGTGCTGACAGGGAGCTTTTGGCACATCACAGACCTCCACTGGGACCCGACCTACAGTTTAAATGGGAACTCAGCATCAGTTTGTAACTCAAGTGGGAATCGTCCTACTCCTGATGCAGGGAAATTTGGAGACTATCTCTGTGATTCACCGTGGGATCTCATTAATTCATCAATGCATGCCATGAGGGATATCCTGCCTGATCCAGACTTCATCATTTGGACAGGAGATGATACACCTCATGTGCCTAATGAGGACCTGGGAGAAGaagcagtgctgagaataataggAAACCTAACCCAAATCATAAAAGAGCTGTTTCCTTCCACCAAAGTATACTCAGCTCTGGGCAATCATGACTACCATCCAAAGAGTCAGCTGCCACCTGAGCAAAACAGCATCTatgaacaaatacaaaaacagtgGGAAAGCTGGCTGGATCCTGCATCCAgagatacatttaaaaaagGTGGATATTACACAGAGAAACTTCTGAATCAGACTGGTCTCAGGGTTTTGGTTCTCAACACTAATCTGTATTATGACCAAaacaaaatcacagaaaatatCAATGATCCAGCAGACCAGTTTAGATGGGCAGACCAAGTGCTTTCTGAAGCAGCAAAGAACATGGAAAAGgTATACATCGTTGGCCATGTTCCCCCTGGATTTTTTGAGAAGAAGCGACACAAGCCGTGGTTTCGCCCGCAGTTCAATAAACACTATTTGGAGCTAATTCAGAAGCACCATGATATCATTATTGGCCAGTTTTTTGGTCATCACCACACTGACAGCTTTCGACTGTTCTACGATAAAGCAGGAATTCCAATAAGTGCCATGTTCCTGACTCCTGGAGTTACACCTTGGAAAACAACACTGCCTGGAGTGGATGATGGAGCAAATAACCCTGGCATTCGAGTGTTTGAGTACgatgaaaaaacacttttggttaAGGACATGATAACCTACTACCTGAACCTGACACATGCAAACATTGCGCGAGCACGCTGGGAGAAGGAGTATCGTTTGACTGAGGCTTTCGGAGTACCAGATGCGTCTCCAGCATCTATGCATCACGTTTTGGAACAGATAGCAGGAGATAACTGCTACCTGCAGAagtactatgacttcaactcTGTGAACTACGACAGGACAGCATGTGGTGCAGACTGCCGTGTTGACCATGTGTGTGCTATGAGAGAGGTGGACTTTGATGCCTATGAGCTCTGTGTGGTGAAGGAGGGAGCATCCTCTGCTGCCCCagcactgctaactgtggcttTAGCAGCAACTCTAGGCATGTGGGCGAGCTACTAATTCTTTTGAAGTGCTGTCTGTGTTACACACACCCTTCTTCCATTCTTTCATTCCTGCAAATCATGGAATTTCTCCTACTTTGGAGGTGAAAGCAAAAGCATCCAATCATTAGTTTTCATTAGTTATACATGTAAAATCCTTTGACTGTTATATGAACAAGAGCTTTCTGTTTTGCTGCATGAGATTGatttaaaaccttttaattttGAAAACATAAACCATATTACTTATACATATCTTCAGTACAAACACCTTTTATCCCTAATGTCACCAATGTATTATTTCTGGTTTGAATCTGGCATTTGTTTGTTATATTGTGTCAACATTTCAAGACAAATGGACTAAAAACTCAAAACTGCCTTggaataaaatcactttttacattgaA

Function

symbol description
smpdl3b Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within sphingomyelin catabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human SMPDL3B (sphingomyelin phosphodiesterase acid like 3B).

NR:

description
acid sphingomyelinase-like phosphodiesterase 3b

GO: NA

KEGG:

id description
K01128 SMPDL3; sphingomyelin phosphodiesterase acid-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249607.3 True 2363 mRNA 0.40 8 20012775 20016592

Neighbor

gene id symbol gene type direction distance location
themis2 NA coding upstream 8232 19989458 ~ 20004543 (+)
LOC103026527 LOC108433575 coding upstream 36467 19968250 ~ 19976308 (+)
LOC103035022 LOC108434176 coding upstream 501899 19504446 ~ 19510876 (+)
ebag9 ebag9,LOC107705161,LOC107666870,LOC107600620 coding upstream 537599 19464330 ~ 19475176 (+)
tmem42 tmem42 coding upstream 568035 19442306 ~ 19444740 (+)
LOC103030656 LOC108433585 coding downstream 108738 20125330 ~ 20130897 (+)
csf3r NA coding downstream 772771 20789363 ~ 20807856 (+)
mrps15 NA coding downstream 792340 20808932 ~ 20818821 (+)
oscp1 oscp1,oscp1b,LOC103033623,LOC107700711,LOC107755648 coding downstream 806086 20822678 ~ 20834496 (+)
LOC103035107 eva1b,eva1ba,LOC108269790,LOC106605123 coding downstream 885605 20902197 ~ 20920794 (+)
G92111 ppp1r8,ppp1r8b,LOC107689150,LOC107688979,LOC106605108,LOC105903676 non-coding upstream 32575 19977487 ~ 19980200 (+)
G92104 NA non-coding upstream 55793 19956093 ~ 19956982 (+)
G92103 NA non-coding upstream 58682 19953546 ~ 19954093 (+)
G92054 hace1,LOC107679309 non-coding upstream 282800 19726890 ~ 19729975 (+)
G92044 eny2,LOC107600664,LOC107551183,LOC105908906 non-coding upstream 361688 19648673 ~ 19651087 (+)
G92134 yrdc non-coding downstream 42528 20059120 ~ 20063047 (+)
G92135 NA non-coding downstream 47401 20063993 ~ 20064597 (+)
G92141 NA non-coding downstream 67515 20084107 ~ 20085005 (+)
G92142 NA non-coding downstream 73238 20089830 ~ 20096957 (+)
G92231 NA non-coding downstream 226873 20243465 ~ 20244047 (+)
LOC103022253 lin28b,lin28a,LOC107744602,LOC107703899,LOC107732726,LOC107689005 other upstream 257300 19731812 ~ 19755475 (+)
LOC103028566 fez2 other upstream 1399058 18604038 ~ 18613717 (+)
lyplal1 lyplal1 other upstream 1505740 18494359 ~ 18507035 (+)
G91760 NA other upstream 1520703 18491680 ~ 18492072 (+)
G91748 NA other upstream 1591512 18400488 ~ 18421263 (+)
LOC103028233 maneal,LOC102777073 other downstream 27110 20043702 ~ 20057320 (+)
grik3 grik3,LOC100334689,LOC105019312,LOC106605119 other downstream 340957 20357549 ~ 20612284 (+)
LOC103032252 LOC103032252,LOC108433590,LOC107755659,LOC107588526,LOC107700712,LOC107704880,LOC107705924 other downstream 802335 20818927 ~ 20821390 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other downstream 823383 20839975 ~ 20860936 (+)
G92350 sh3d21 other downstream 924834 20941426 ~ 20945506 (+)

Expression


Co-expression Network