G92111 (ppp1r8,ppp1r8b,LOC107689150,LOC107688979,LOC106605108,LOC105903676)


Basic Information

Item Value
gene id G92111
gene name ppp1r8,ppp1r8b,LOC107689150,LOC107688979,LOC106605108,LOC105903676
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 19977487 ~ 19980200 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU123870
CTGGATTAATAATCTCATCGTCTTCATTAAAGCTCACTCTGGAGCTTTTCCTTTTCCTCTTGGGTCTTGGGATATCCAGATTCCCCTCCTCTATTGTCAGAACAGAGATGCGTTTGTTGTGCGCAGTGTTGAACTCGGTCAGGTTctCCAGCTCAGTCTCTTCTTCAGGAAGACCTAGCAGTCCTTTCAGTTCCTCATCATCTCCTGCTTTGTCCCCTGTCCCCACATTAGCCTGGCTCTGGGGTTTTTCACGAATGGTGTAGACACGTGTGGAAGCCCCGAAAGACATAGTAGAGTCAATAGGAACCTGCTGAGGCTTGTGAGGCTCCAGGCGAATGTGTCCGAGGAAGGTGCCATGTGTGCTGTTGAGGTCAATAAGAAAAagtctttttaaatgtttgtggtAGACAAGGGCAGCATGCACTCGAGAACACGACTGATGATCAATGGTGAAGTCACAGAGGTCCGGGTTCCTCCCAAACAGGTAATACTTCTTTTCATCAATAATCAGTTTcTCAACTAGCTTATCTCCTTTTACCACATCCAAATGTAGTCCTGGTGGTGGTTTACCTGccCATGAAGGACAGTCAAACGCTGGAATCTCTGCAGCTGTAGGTTTAGCCATCGTGCTTCAGCTACATTCTCCATTCATTAAACTACAGCACTGAGGATAATCTCCCCTCCGCCCC

Function

symbol description
ppp1r8b Predicted to enable mRNA binding activity and protein serine/threonine phosphatase inhibitor activity. Predicted to be involved in negative regulation of protein dephosphorylation. Predicted to be active in nuclear speck. Orthologous to human PPP1R8 (protein phosphatase 1 regulatory subunit 8).
ppp1r8 Predicted to enable mRNA binding activity and protein serine/threonine phosphatase inhibitor activity. Predicted to be involved in negative regulation of protein dephosphorylation. Predicted to act upstream of or within cell population proliferation. Located in nuclear speck.

NR:

description
nuclear inhibitor of protein phosphatase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123870 True 689 lncRNA 0.47 5 19977487 19980200

Neighbor

gene id symbol gene type direction distance location
LOC103026527 LOC108433575 coding upstream 1179 19968250 ~ 19976308 (+)
LOC103035022 LOC108434176 coding upstream 466611 19504446 ~ 19510876 (+)
ebag9 ebag9,LOC107705161,LOC107666870,LOC107600620 coding upstream 502311 19464330 ~ 19475176 (+)
tmem42 tmem42 coding upstream 532747 19442306 ~ 19444740 (+)
LOC103034694 gpd1l,LOC103034694,LOC108434205,LOC107551192,LOC107600618,LOC107713825,LOC107705153,LOC107666803 coding upstream 539803 19429658 ~ 19437684 (+)
themis2 NA coding downstream 9258 19989458 ~ 20004543 (+)
smpdl3b smpdl3b coding downstream 32575 20012775 ~ 20016592 (+)
LOC103030656 LOC108433585 coding downstream 145130 20125330 ~ 20130897 (+)
csf3r NA coding downstream 809163 20789363 ~ 20807856 (+)
mrps15 NA coding downstream 828732 20808932 ~ 20818821 (+)
G92104 NA non-coding upstream 20505 19956093 ~ 19956982 (+)
G92103 NA non-coding upstream 23394 19953546 ~ 19954093 (+)
G92054 hace1,LOC107679309 non-coding upstream 247512 19726890 ~ 19729975 (+)
G92044 eny2,LOC107600664,LOC107551183,LOC105908906 non-coding upstream 326400 19648673 ~ 19651087 (+)
G92007 sybu non-coding upstream 484730 19487367 ~ 19492757 (+)
G92134 yrdc non-coding downstream 78920 20059120 ~ 20063047 (+)
G92135 NA non-coding downstream 83793 20063993 ~ 20064597 (+)
G92141 NA non-coding downstream 103907 20084107 ~ 20085005 (+)
G92142 NA non-coding downstream 109630 20089830 ~ 20096957 (+)
G92231 NA non-coding downstream 263265 20243465 ~ 20244047 (+)
LOC103022253 lin28b,lin28a,LOC107744602,LOC107703899,LOC107732726,LOC107689005 other upstream 222012 19731812 ~ 19755475 (+)
LOC103028566 fez2 other upstream 1363770 18604038 ~ 18613717 (+)
lyplal1 lyplal1 other upstream 1470452 18494359 ~ 18507035 (+)
G91760 NA other upstream 1485415 18491680 ~ 18492072 (+)
G91748 NA other upstream 1556224 18400488 ~ 18421263 (+)
LOC103028233 maneal,LOC102777073 other downstream 63502 20043702 ~ 20057320 (+)
grik3 grik3,LOC100334689,LOC105019312,LOC106605119 other downstream 377349 20357549 ~ 20612284 (+)
LOC103032252 LOC103032252,LOC108433590,LOC107755659,LOC107588526,LOC107700712,LOC107704880,LOC107705924 other downstream 838727 20818927 ~ 20821390 (+)
stk40 stk40,LOC107755633,LOC107704982,LOC107588492 other downstream 859775 20839975 ~ 20860936 (+)
G92350 sh3d21 other downstream 961226 20941426 ~ 20945506 (+)

Expression


Co-expression Network