RNA id: TU124774


Basic Information

Item Value
RNA id TU124774
length 2841
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G92792
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 23126250 ~ 23129788 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATTCCATCTTTATTCATTTGTCGAAAAAATAGACATGTCCCAACAGCAGAGAAGTTGTAGATTTGAACATTTCTGGTATTTTAAACATCTCTAACACTTTGCACTCCTCACttgtaacaaaaaaacagaaacctaTCTCATTATGAACTGCAGCACTTGATATAATCAAAAGGAGTTGTCTGTAGTCACAAAAAGCATTGTCAACACAGCAACACACCTCTTCCATATAATGCTATAATGtcactcaaaactcaaaaagaaAATCTGGTAAACAACAAAGTAATGTGACTTAGTAGAGCTAAGAGAGAtgttttgttaaaatagatTTCTACCAGCAAGACACTGGTTTTAGCTCAAGGCAGAAAgaatatttaccttttttttaaactattttattagTTGTATTTTGGGTTACAGCAGTACTAATTTGATTTAACAGTTTAGATTTGTCATGCAAAGTGTTTTAAGAAGTTTGCACTACACCTGAAAATAAATGGAACATTATATAGTACCATGTGTGCATTTGTTTCTTCCTTTAGCagaattaaaatgataatgttTTTGTGAGAAAAGCGATTGTCTTCAGTTCCTCTTTAGTCCTTTATATGGTTTTTAATTCCATTCTAATTTCCATTTTTATGAATTTCAAGAAGAGAATGATAATTCATGCTGGTTGTATTATAAGTAGTTTCTTTTCAGTTCTACAGAAAACTTTAAGATCATAGTTATTTTTTCAGCTGATTAgattatttcattaaaaaaaaacactatttttgtTGTCATCTGCTGCCTGGAAAGCAATAGGTGAGCAAAAATGTAAGGTTTTACAATAAGATTGATATGCagccatttttttctgtttttatacagGATCAAAAGTAAAAGAAAGCTACAGGTGACAAGTTAGCAAGACCTTGTGCTAACTGCCCCTATTtgtgtttcatttattataataattcttAGCATAGTTAGcttataatatagtttatagtagGAAATAAGCATCAGTCCTAAAATTACCATAAATCTCTACAATTTACTTAAATGGTGTCACCAAACTGCTGCTGCACTGATTCAAGTGTTAAAACTGATGCAGGCCAAAATGCTAagatatgtttgtgtttttagcttttaatttCCCGCCATAGGAATTGTTTCtaaatgtgtatttgtgtgtttgtttttaaagattCAAGATTGTAATGAAAGTGTTAAGAAAATGCTGGAAAGACTACAGAAGCTACTACAAATAGCAGTGTCGATGACGCAAACAGCAACACAGGCTctacagagagaaaagaagcaAAATCTGAAGGGAATGATCCAAACTGAATGTGTGCACTAATAAGCCAATGTGTGTAATGACTAATGTGTCAGACATCCTCCGCAGAGGCAGAAGAAGGATCTGTGGGCTGCACATGGATGGATCATTTGTCAGGACAGATGAACCGGATTGGCTGAGAGGACTGTGATGTATTTGATGCAGTTATGTAATGTTGGTGAACCCTCAATGGAAGGTTTCATTCTGCTTCAGCTGTCGATGTTTACTGGGCTGATTCATCATGCATTTGCTTTGCAGCGCTGTTGAGAAGATTTGTGTAGCCTGTTTAAAAAGGGCATACGCAATATATGTACGAGATGATAGAAGAACAAAGCAGGTTGTTACACTATTTCCGGAGATAAATGATGCCATCATATTGATCTGAGTTAAGCCTAAACTGAACAGAAACAACCTGCAAGAGAAAATGACCCTTAAAAGATacacaaaaatggaaatacaagGTTTTTTGCAGGAAAGTGACTATTTGTTGGTAAGAGTCTTAATAAAACGAAaaacttataaataaaataaagtagtatatcgtcactgtctTGTAAAAACTGCATTGACCACTTTTGCTTTATATATTGTGAATCTGGCCATTGTTCTTTACACTGGCAAATGTCATAAAGCCAGTAGAATCAACagaaatgcaccaaaattataaataaataaatgaagaaaagatAGACACAAACTTACAATTTATAATTCAAAACCTAAATCACTGTATGGCTGTATATTTACTCCAGATCTAGGCTTAACCAATAGAAATTAGCTTTGTAACCAAGGATTGGTTCCAGCTAAAAGAGCCTTAATaagatttaagaaaaaaattctACTGGCTGTTGCTAGCAGTCATCTccatgtatgagtgtgtgtgtgtgctgtgtaatTTAGATACAGGAGCACCGGTTTTACAAGTGATCTATAATACCTTAATTACCAGAAATACTCTTGATATAGACTGACAATATGCATCAGGATAGCTGCAGTGTTTTCTAGCTCTACTGGACCTGGAACGGTTGTGTAGCGTCTCACTACAAGCTTGCTCTGCACCATCTCACTGGCAACGGGGCCAAGGACCGCGCCAGAGGTCAGGTCAGGTCTCAGCTCCAGGCTGGATGTTCTGGACCTTGGACAGAGTGACGGGCACTTTGGCCTCTCCGGGAGTGGGGGCACGGGTCACTGGCTGAACTGAGGCCTGGATCTCGGCCAGTCGCTCTTTAAAGCGCTGCTGGAGCCGGAGCTCATCTTTGGAGCTGCCTTGTGCACAGGCAGCCAGTAGAAGGCCCACGGCCATGCCGCTGCCGCCCACGCAGAAGAACACGGCGCCGGCCAACTTGCAGGCATCCAGGGCACGGTTAAAACGCACGGCTCGGCCGTCCACGAAAAGCAGCTCGTCTTCACCGAAGGCCTCGAGCCGGGGTGGGGTGGCGTAGCCCACCAAGAGCACTGACAAACCGGCGACCAGAATTAAAGCACCTAGTGCGAGACAGACCTGAAAGAGATAAGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124712 lncRNA upstream 184043 22938239 ~ 22942207 (+) True G92743
TU124704 lncRNA upstream 226177 22899697 ~ 22900073 (+) True G92735
TU124689 lncRNA upstream 312468 22813579 ~ 22813782 (+) True G92721
TU124680 lncRNA upstream 439501 22686421 ~ 22686749 (+) True G92715
TU124673 lncRNA upstream 524261 22601741 ~ 22601989 (+) True G92708
TU124776 lncRNA downstream 7746 23137534 ~ 23137990 (+) True G92794
TU124782 lncRNA downstream 80664 23210452 ~ 23210794 (+) True G92800
XR_002650415.1 lncRNA downstream 183287 23313075 ~ 23314198 (+) True LOC111193297
TU124796 lncRNA downstream 240436 23370224 ~ 23370819 (+) True G92814
TU124800 lncRNA downstream 254657 23384445 ~ 23387905 (+) True G92818
XM_007254534.2 mRNA upstream 6152 23085571 ~ 23120098 (+) True dcdc2
XM_022673767.1 mRNA upstream 59493 23042224 ~ 23066757 (+) True slc6a3
XM_007254533.3 mRNA upstream 59990 23040938 ~ 23066260 (+) False slc6a3
XM_007254532.3 mRNA upstream 103150 22977912 ~ 23023100 (+) True LOC103025629
XM_007254531.3 mRNA upstream 252190 22869102 ~ 22874060 (+) True LOC103025323
XM_015607873.2 mRNA downstream 1100066 24229854 ~ 24234149 (+) False dctn3
XM_007257263.3 mRNA downstream 1100075 24229863 ~ 24234149 (+) True dctn3
XM_007257265.3 mRNA downstream 1107336 24237124 ~ 24248401 (+) True ttk
XM_007257266.3 mRNA downstream 1120466 24250254 ~ 24310553 (+) True bckdhb
XM_007257269.3 mRNA downstream 1308212 24438000 ~ 24441139 (+) True tpbg
TU124348 other upstream 1774247 21269165 ~ 21352003 (+) True G92462
TU124346 other upstream 1774247 21275163 ~ 21352003 (+) False G92462
TU124347 other upstream 1774247 21275163 ~ 21352003 (+) False G92462
TU124179 other upstream 2180744 20941426 ~ 20945506 (+) True G92350
TU124129 other upstream 2304860 20819150 ~ 20821390 (+) False LOC103032252
TU125154 other downstream 1568345 24698133 ~ 24708374 (+) True G93079
TU125228 other downstream 1784901 24914689 ~ 24965444 (+) True G93135
TU125312 other downstream 2182089 25311877 ~ 25313707 (+) True G93185
TU126114 other downstream 3818675 26948463 ~ 26948879 (+) True G93753
TU126349 other downstream 4789806 27919594 ~ 27939020 (+) False LOC111193309

Expression Profile