RNA id: XM_007257269.3


Basic Information

Item Value
RNA id XM_007257269.3
length 3140
RNA type mRNA
GC content 0.42
exon number 1
gene id tpbg
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 24438000 ~ 24441139 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taataatgattttgaATATTGTCTTTGATGTACACAGAGTgtaaatagctaaaaaaaaatcgaaGGTTGGGTCGTGAACCAGATAGACCACGCTGTCGTGCGGGTAATGTTGGGTGTGttaagtgtggtgtgtgtgtggtgagtctCGCGGGCTCCCCCGTCCGCTGCTGTAATGGTTGAGTCCACTCAGCGGTCTGTGGACAGGCTGTAGGGAACGGGCGAGGAGGAGGAATCCAACTCGGCGGAGTCCGGGTGCTGCGCTCAAAACCAGTGTCATGAAAATCCGAAAAGATTACAGAATCCACAAGGGAAAGGGAAAAGTTGGATGGTTCTGGATGTATATCAGCGCGACCAAACGGTTAAAACCTGAACAGTTCACCCAGAGGAGGTAATTTCTGTTGTTTTGGAGGGACTGCGGGGAGGTATCTAAGTAGACTGGAGCAGATTGAACTTTTGCCTGAAGTGATGAAGGAGAAGCAGCACCGCCAGCTCAACTaccagctctaaaactcaacaAAGAAGAGGAATAATGAAGACTGTGTGAGTCTGAGACCTTTTAAACTGCTGGATTCCATGTTAGCTTGTGTTTTTTGCCTCAACCCCGTTACTACGTAAGTCAGAAGTCCAGAGGGAGGAATGGGAGGAATGTGACTGTACTCCAGGAATTTGAAATAAACACTGAGCCTCTGTAGCAGACCTGTCTTCATTTTTCTACTTAGACATTTGTGTTACACTCTTTCTGGGATTCAGTCACCTTCATTTGTCATTTAAATGCAAACATGTTGGTAGTGAAAGAGAAACATGCTCACCACCGCCTCCTGACTCTCTGCCTGCTGCTTGTTCTGTCATTCTTTGTCCCAGTCTCTTCTCTGGACTGTCCTGATAAATGTATTTGCACATCAACAACGGTAAAATGCCTTTACCAGAACTTAATATCCATTCCACAGCCTCTACCACCAAACACAACAGCACTTTTCCTCAATGGAAACAACATTACCCATCTAACTGAGGACTCATTCCCTGCTCCTCTAGAGTTTTTGACAGACCTCTATCTGTCTGGAAACCAAATAGAGCAAGTGGACCCTGGAGTGTTTGACAACTTGCCCAGTCTCCATTCACTAGACCTGAGCAACAACAGGATGCTGAATTTCAGCCCTGATGCTTTCCCAGAGAACAATAAGCTTAAGGTCTTAAACCTCAGTCGCTCTTTGTACAACGTTTCGTACACGGGCATAATTTCCAACATTTTAAAGCACAGTGTTCCTAAACTTTCCCTTCTTAACCTGTCCAGCAGTGACCTGATCCTGCTTCCAGATACCATTACCAGTTTACCTGACCTAAGCACTTTGGACTTGAGGAACAATTCAATAATCTCAATAAAAAATGTCACTTTCAGAAGTCAAGGGTTAAACCATCTTGACCTGCGGGACAACATTCTGAAGAAGATACCCAATGGGACTTTGGCCGATTTCAGCCAGATACCTGGGCTTCGACTCTACCTGGCAGATAACCCATGGGTTTGTGACTGCGTAATGAAGGACATGGTGACATGGTTACAGAAATATGATTTTGTTGCTGACAAAGTGAACTTGACTTGTGATGAGCCTCAAAAATTAAGAAACACCCCTCTCCTGCATGTTGACAAGGGGAAGCTGCAGTGCAACCTCTCTCCTTCACAGAAAGATGTTAGCCTAGAGACATCATACATCTTTCTGGGTATGGTATTGGCCCTCATCGGGGTAATATTTCTGCTGGTCCTTTACCTCAACCGAAAGGGCATCAAGAAATGGATGTACAATATCCGTGATGCCTGCAGGGACCACATGGAGGGCTACCATTACAGGTACGAGATCAACTCGGACCCTCGTCTGGCCAACCTGAGCCTCAACTCGGATGTGTAAGGGGGTTTTCAGGCTGTTCGAGATGTGTGAGGTTGAGGGGGGTGAAGTGATGTGTCTCACACAGTCGATGAACGGTGACTCAGCTCTCGATTTGCGTAGTTTCCACAAGCTTTTATGCCCTGATATGCAGTGTGCTGTGCCAGAGAGGACATTAATTGGCTTCTGCTAGGGTGGACCGGTGGTGCACGCCACCCGGCAATTTTCTGTCTGCTGATGTGTCGTGTCAAGTGTAAATGTTGTGCAATGCTGCATGAATCAAGAACTCATTATAAAAGGTTCATAAGTTCTTCTCCAGAAAGTATTTTGGGACAGTGTGGAGTGTGATGCAAGGATCTATGTAATTTTAATGAACACAAGATATGCACATTTGTTTGCTTGCAAAATGACCAATTAATTCTATGTGTCTTAACATTTTCCCCACTTTTTAAACCTTGGATAATATTTGCTCATGCTTGCATgtgtttctgtactttttcaATGGTTGTGATATCATACTATCCACATTTGATTATCAGAgttgttcatttttatattcactTTTGTTGAATGGACATGGATTGACTTTTCTTACGAGTCTGAGTATGTTCTGCCGAATAAAAAGGTCTTGCATTGATCCCTCTTCTCCACTCCGGTTCTTTGCACTCCAGAGAGGAATCCGAAGCTGCTGAAACAAAAACGGGGATTAGGCATACTCTTGCACATGCAtgcactcacaaacacacacagataaacattGATTCAAGGCCATGTGTTTTTTAGACAACTCTTTGAAAAAGTAGCTTTTGATCACAGACGTGAGCGACAGAAATGTTCATCTTAGTGCCACGTTTCTTTTTAATCATAATCGTAACAAATGTTTCTAAACTCATCctctcaagtgttttttttttccctgcttGCTGTTACCCCTCAATAATTTAAATCTGTTATCAAAATGCTGGACATTTTCCCAATAATTATGGTGGTAATGTTGAAATTATATCAATACTCATTTTTGTACTACACAATATGTATTGCAGAAGTTTGTTTTTTGAGGTTAAGTAAAAACACATGTAGGCATGTTtttactacattacactacattgtATTAAATCTATTTAAAGGTATTGGTGTCACTCAAAATATCTCCAATTTTAGCTGTTTAACCTTCTGACATATATCTGGCAGTTGTTCATAATGTTTTGTCAAAAGGAATAGAAACGCTCCTAAATAAATTggaataaaacctttttacactga

Function

GO:

id name namespace
GO:0072359 circulatory system development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125016 lncRNA upstream 27070 24374667 ~ 24410930 (+) True G92977
TU125010 lncRNA upstream 115126 24322660 ~ 24322874 (+) True G92973
TU124975 lncRNA upstream 230029 24207689 ~ 24207971 (+) True G92952
TU124940 lncRNA upstream 268924 24168663 ~ 24169076 (+) True G92929
TU124843 lncRNA upstream 503436 23859359 ~ 23934564 (+) True G92848
TU125092 lncRNA downstream 41828 24482967 ~ 24483312 (+) True G93034
TU125104 lncRNA downstream 69016 24510155 ~ 24527844 (+) False LOC111193352
TU125109 lncRNA downstream 69016 24510155 ~ 24537540 (+) True LOC111193352
XR_002650469.1 lncRNA downstream 90585 24531724 ~ 24537258 (+) False LOC111193352
TU125162 lncRNA downstream 326996 24768135 ~ 24769835 (+) True G93087
XM_007257266.3 mRNA upstream 127447 24250254 ~ 24310553 (+) True bckdhb
XM_007257265.3 mRNA upstream 189599 24237124 ~ 24248401 (+) True ttk
XM_015607873.2 mRNA upstream 203851 24229854 ~ 24234149 (+) False dctn3
XM_007257263.3 mRNA upstream 203851 24229863 ~ 24234149 (+) True dctn3
XM_007254534.2 mRNA upstream 1317902 23085571 ~ 23120098 (+) True dcdc2
XM_007256866.3 mRNA downstream 390407 24831546 ~ 24837635 (+) True LOC103043665
XM_022673794.1 mRNA downstream 390823 24831962 ~ 24837635 (+) False LOC103043665
XM_022673795.1 mRNA downstream 407858 24848997 ~ 24861508 (+) True LOC103044355
XM_007256868.3 mRNA downstream 420946 24862085 ~ 24878057 (+) True LOC103044674
XM_007256867.3 mRNA downstream 420948 24862087 ~ 24878057 (+) False LOC103044674
TU124348 other upstream 3085997 21269165 ~ 21352003 (+) True G92462
TU124346 other upstream 3085997 21275163 ~ 21352003 (+) False G92462
TU124347 other upstream 3085997 21275163 ~ 21352003 (+) False G92462
TU124179 other upstream 3492494 20941426 ~ 20945506 (+) True G92350
TU124129 other upstream 3616610 20819150 ~ 20821390 (+) False LOC103032252
TU125154 other downstream 256994 24698133 ~ 24708374 (+) True G93079
TU125228 other downstream 473550 24914689 ~ 24965444 (+) True G93135
TU125312 other downstream 870738 25311877 ~ 25313707 (+) True G93185
TU126114 other downstream 2507324 26948463 ~ 26948879 (+) True G93753
TU126349 other downstream 3478455 27919594 ~ 27939020 (+) False LOC111193309

Expression Profile