RNA id: XM_007256867.3


Basic Information

Item Value
RNA id XM_007256867.3
length 2965
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC103044674
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 24862085 ~ 24878057 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCACCTTAAGCCTTAATTAAACCAGACAAGCTTGTAGGCACTTTGGatgaattaaaatcattttataaagcattaaacTGTTTACTCTGCTTTCAGTGATTGAAGATCTGTGGCACCCCTGCTAGGATTGGAAAGCTGGAAATTCTAGTTTGGGTTCGGTCAGAGTAGGAGAGCAGGATACGTGGACGGAagcaacagagaaagagagagaataggaaTGTGAGATATGCTAAAATGAGAAAAGCAGGTAAAATTGGAACTGAACAAAAAGGTGGATGAACCAGTTTTGCAGGACAATAGAGAACGCAGGATAAAGGGAAAGTCTTGTCCTGGAAGCAAGAAGAGAAGGTTCGGCAGCTGGAGGGAGAGACAAAGCTTAAGAATGGGGTGGACGGATTAGCGTTGAACCTGTATTTTAGAAGGAAAATAAGATTAAACAAAAGTGACGGCAGGTTTACGGTAATGAAGACGAATAGAAATTGTTAATAATTCACCATGTCAGGAGCTGCTTGACTTGGCAAGTCAGGAGGGCGGGGCTAAATCACTAATGAAGGTGTGACCTGACCAAACAGCAAGGCTGAACGTGAGAAAGACAGAAGACAACATTAGACTTGTGTTGGCAGATTTAATGAGGGACTAATCTGAGAGCAAAATGCTGAATGAAGGAGGCTGACTGAGACTGAAGTTTGCTCCGGGCAAATCGTGAGACTGGGAAACTGACCACATACACACAAGATGGCGGCCACAACGAGCCAGCAGTATTCAGCATGTAAGACAGGAGACACGCTCTGTGAGATTCGTGTGTATGAGCAGGAGGTAATTGTGGTACCTGTTCTGATGTTGATGGGTTTTGGAGTCACATTGGcagttctgctgctgctccacttGTGTCCTGAGAAAGCAAGATGCCTCCTGCCAACAGACAGCGCCAGCTCCAGCCGCACGCCCAAAAACAGACGAATCCTACAGGGAATAGATGctcctgcagGTCTGAATGCTCTGGAGGGTGAAAGTATAGCCCTGGACACTGCTCCCACTTACTTCACCTTCAGCAGTGCACCCACTACCCGTGCCTCCTACAAACCTGAACGCTCACTGGGTGTGGATAACCTGGCCTTCAGTGGTGATGGGGGCTCCTTTGGTGCTGCAAGCTCTGCTCTGGGAAATCCCAGGGAACTCCCACGTCAGCGGCTGCCTGAAAAGTTCAACAGAGTGACTGCTCTCCTGTCCTCATACTCACTGAAGACTGACAGCTCGGTGTCTCTGTACAGAGCCCGCATGGAGAACAGGAACGTCGTCCTCAGAGTGCTCAACGATACAGCAAGTGCCAATGAGTGTCAGTCTTTCCTAGGATTTGCTTCCTTCTTGTCTCAGCTGGGGCCACACCCCTTCCTGCCTGAGCTCATTGGTGTTGTCTCCTTACGTGCTCCTCTAATTACAGTTATAGAGGAGATGGAGAACCAGGACCTGCTCAGCTTCCTTTGGAAATGCAGACAGGAAAATGCTGGACCGAATGTTTGTGAGATGACAGAAAAGCGTATTTTCACTATGGCTTCCCAGGTGGCATCTGCTCTGGAATATCTTCACTCCAAAGATCTCATCCACGGCAACATCAAGGCTCACAGTGTCCTGATCAGCCGCTTGTTGACGGCCAAGCTGTGGGGACTGAATGGTGTCTATGACCGAAAAACTCAGGGAACCAATTACAAAGAGGATCCTGGCAGGAGAAAATGGCAGGCACCTGAGATACTCGCGAAGAGGCCAGCCAGTCCAAAGAGTGACGTGTGGTCTTTTGGTCTACTGTTGTTTGAGATGGTGACTCTTGGTGAGGCTCCGTATGCTGAGATTCCTGTGCAGGAACTTCTTCAGTATCACCAGCGAGGAAAGACCCTAAGGAAACCAAACAACTGCTCCAATCTTCTacattCCATTATCAAAGCCTGCTGTCAGTGGAAGGAACAAGACCGTGCCCCGCTGGCCGAAATCACCCACAAGCTCCAGTCATCAGAGAAAAGTGCCAATGATAAGGTGGTTCTTCGTTCTCCTGAACCAGTTAACATTGAGCGGTACCTGCAGGAGGCGGGATATGGAGAATCGAACAACTATACGGTCTTCTGAAGCCTGAAATGAGACATTTCTACTAGAACAATAAATGAGACAGACTCAAAAATCTGAATCTGATACCCACCATCTCAGACTAAATGAAGAATGATCTTCTGTTTGTAAACCAAAGATGTCTCTCTGTCTGGGAAGtgtgtactgtattataatgaCTGGCGGGGGTGACAAAAACATGCAGTTGTAATGTTCTGAGAACAAGAGACATTTTAATCTGTATTATAATTGATTGCTTGAATCCTGTTTACAGCCTTCTATGTTTATTAAGCagagatatataatatattcggGAATCACTTTTATATATAGGTTTATTATTGGTTCTTGTTTTTTCTGAGGGAGGGTTTGGTATTGTACATGGTGAGAACAATGACACCTGTTTACCTTAGGAAAAGTGACAAAAGGAagactttacaataagggtcacaaataacagacttatgacagtaataaacattgttaaatagttaagtaatgcataaactaattattaattgaaacTAGTGCAGACAATATTAGACATTACAAAAtgttaatgcttaagaatgttgaaaataataaatataaagacattagtttaaataattgtaatgATACATAATGACTTAACttgtgttaattaataattagttgtgACATTTTGTACTGTTAATTAAAGGTACCCTTATTATAATGTGCTATCAGTGAGGTTTTATTACTTTACTTGTAGATCAGTGCCATACCATTGGACAACAAGACTTATCTGAATATGTCATGTTGTATTTTTACCCATGTGCCATAAATGTGagcatatttttctttttctgaagaaaaataaaacttttcaaaatggtcatttaacagtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125199 lncRNA upstream 19037 24842847 ~ 24843050 (+) True G93117
TU125196 lncRNA upstream 22339 24839218 ~ 24839748 (+) True G93114
TU125181 lncRNA upstream 54757 24806914 ~ 24807330 (+) True G93102
TU125164 lncRNA upstream 82270 24779565 ~ 24779817 (+) True G93089
TU125162 lncRNA upstream 92252 24768135 ~ 24769835 (+) True G93087
TU125213 lncRNA downstream 9389 24887446 ~ 24889351 (+) True G93126
TU125222 lncRNA downstream 33360 24911417 ~ 24912271 (+) True G93134
TU125223 lncRNA downstream 36632 24914689 ~ 24917690 (+) False G93135
TU125236 lncRNA downstream 63161 24941218 ~ 24941609 (+) True G93138
TU125247 lncRNA downstream 168939 25046996 ~ 25055662 (+) True G93146
XM_022673795.1 mRNA upstream 579 24848997 ~ 24861508 (+) True LOC103044355
XM_007256866.3 mRNA upstream 24452 24831546 ~ 24837635 (+) True LOC103043665
XM_022673794.1 mRNA upstream 24452 24831962 ~ 24837635 (+) False LOC103043665
XM_007257269.3 mRNA upstream 420948 24438000 ~ 24441139 (+) True tpbg
XM_007257266.3 mRNA upstream 551534 24250254 ~ 24310553 (+) True bckdhb
XM_007256872.3 mRNA downstream 11897 24889954 ~ 24894549 (+) True LOC103046305
XM_007256871.3 mRNA downstream 16726 24894783 ~ 24906329 (+) True LOC103046000
XM_007256869.3 mRNA downstream 41796 24919853 ~ 24937181 (+) True LOC103045177
XM_015607779.2 mRNA downstream 46226 24924283 ~ 24937181 (+) False LOC103045177
XM_007256875.3 mRNA downstream 178801 25056858 ~ 25067665 (+) False LOC103047218
TU125154 other upstream 153713 24698133 ~ 24708374 (+) True G93079
TU124348 other upstream 3510084 21269165 ~ 21352003 (+) True G92462
TU124346 other upstream 3510084 21275163 ~ 21352003 (+) False G92462
TU124347 other upstream 3510084 21275163 ~ 21352003 (+) False G92462
TU124179 other upstream 3916581 20941426 ~ 20945506 (+) True G92350
TU125228 other downstream 36632 24914689 ~ 24965444 (+) True G93135
TU125312 other downstream 433820 25311877 ~ 25313707 (+) True G93185
TU126114 other downstream 2070406 26948463 ~ 26948879 (+) True G93753
TU126349 other downstream 3041537 27919594 ~ 27939020 (+) False LOC111193309
TU126350 other downstream 3041537 27919594 ~ 27939020 (+) False LOC111193309

Expression Profile