RNA id: XM_007256869.3


Basic Information

Item Value
RNA id XM_007256869.3
length 3104
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC103045177
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 24919853 ~ 24937181 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCCCCAAAGATTTTTTCAGTGCTAGTTTTCCATCGGTCGAGCAAGACAGACACACTCTAGtgtctgttttctttcattttctttttttgtttttttttagattttcatcATAGATaagacttttatattttttctttccattttctaGGACCACTTCTGGTCCAAGTTTTTGGACATTAATCTCCACTAGCCTTTCTGCTAGTTTTTTTATCCCTACTTTTCTCTCTCCCGTTCCTCTTTTCCCTACTACCCCCTTGGTCTTTGCTCCTGCTGGTCTCTTTTCTGGCTATGCACCATGCTGTCCTCTCCTACTGTCATTCTACAGCCTTACGGACTGCCTGTGTACCCACAAACTGCCTCCTGCTACCCCAGCTTAGTACAGGGTGCCCCTGCCCAGGAGGCAGGACCGGGCACTGGTGACCCTGCCCTGCCTCAGGTATATGCCCCACCCCCTTCATATCCACCTCCTGGACAGGCCCCTCCCACACCTGCCGGCAGGCTCCCACCCCTCGATTTCAGCTCCGCCCACGCCAGCTCGGAATACCAGGACCACCACCAGTTAAGAGTCTACCAGGGAGCTCAGcatgagggggcggagccttTAACTGCTAGTAGCACGGATGACGCCCTGGCCCCTGTGACCTCTGACCCACAGCCTCTGAGTGCATCCGTTGCGAGTGGTGGCGGAGCTGGAAGTGGGGGTGAGGAGGAGGGGTCGGGTAAAGCCCAGCCCAAAAGGCTTCACGTGTCCAACATACCATTCCGATTCCGTGACCCGGACCTGAGGCAGATGTTTGGGCAATTTGGCAAGATTCTGGATGTGGAGATCATCTTCAATGAGAGAGGGTCAAAGGGTTTTGGATTTGTGACGTTTGAAAATGCAGTGGAAGCTGATCGAGCCCGAGAGAAACTCAATGGCACAATCGTGGAAGGCAGAAAGATTGAGGTTAACAACGCCACGGCCAGGGTAGTGACCAAGAAGCCACAGACCCCACTTGTCAATGctgCTGGGTGGAAGATTAATCCAGTAATGGGAGCCATGTATGCCCCTGAACTTTATACTGTTGCCAGCTTCCCCTATCCTGTTCCCACACCAACCTTGGCATATAGAGGCTCCGCCCTTCGGGGGCGTGGTCGTGCAGTGTACAACACAATTCGCTCTGCAGCCACAGCGGCCACCCCTGCTGCTGTTCCAGCCTATCCAGGGGTCGTTTATCAAGAAGGTCTTTATGGAACGGAAGTTTATGGAGGATATCCTGCCACATACCGGGTTGCTCAGTCCCCTTCAGCTGCAGCCACAGCCGCTTACAGTGACGGGTATGGGCGAGTGTATGCCACTGCAACTGACCCTTACCATCACTCTGTCGGGCCGACCACCACTTACGGAGTAGGAACTATGGCAAGTTTGTATCGTGGAGGCTACAATCGCTTTACCCCTTATTGAACACAGCCCATCTGCTACACCTCTGCCTCGCAGCGGGACTCAGGGGTCACTCCCATCACAGAGCAGGACGGCCACTGATCTTGGGAAATGCCTTGAGAAGCAATTGACCTGAGCTAAGACCTGAGTGGCCTTCTGGAACAGAACTGAACGTATTTATTTAATGTCTGAAAGTGCTGAAAGTATTTATTGAAGCTTAGGAATTGCACCAACACTGAAGTCCAGAGTCTGAGAAGATCCAAGCCACTGGAATCttagtgatttttgtttttatgtttttgatgtGGTGCTTAAAACATAGGTatgttcactttttaaaatatatacgcCTAGGGAACATTTTTCAAAATGCAGTGCTGCCTATGAGGCCAGTGAGAACGGGTTGAGGTTGTGGCCTGTTCTAAAATACTGATTTTGGCACACTTTTTCCAAAAGCATCTTAGTGTGAAGCTCATCTCAACTGGTAAAGAAATCAGTGGTGATCAGGGTGATGCTGGTTTGACCATTTAAGAGTCCTTGGAAGCTTTTGGGAGACCCAATCCTGATGAGTTAGAAATTTATTTCAGTCAAAACCCTGAAGAGAAGCTAGGCCATGTTGTAATGCTAAACAATGGGCTTCTAGTTTCACTTTGTTCACTTTGCTTGAACTTTTTCTTTAAAGTGTGTTTATAGCTTTTGGAAAAGACGTTCTTCAGAGAAACTCACAGACTTTCACTGCCCAGCTTCATCCAGAGTCTGGGGTATTACACTGTATATCATGGTGACACCTTTAAGCTGATTTTGAGTGCAGTATGTCACTTGCTTAGCTACAagatgagtgtatgagtgtgtgtgtgtttgtgtgtgtgcttggtTTGTGTGATTTTATAATGGTTAAATGTGAAAAGGTGAGGTACAGTGATGGCGCCGGTGCATGTGATACATTTTTCATACATTCATCACTGCCATGTTCACATGTTCTTCATAATCTACCTCTCAGATGGACTTTTCTCCTGTTTTCACTCAGTTTGCTCTGATACTTCTCCTTTAACAAACCGTCAGGCTGTCTTCAGCATGCTGCGTTGTCCCATTTGTTttctaaaacaatatttaaaagtgCCTTTTCCTGCTATATCAACTCTTGCTCAACCCCTTATACATTTAAACCATGTATGTAAGCCCTCACTTCATTACTATTCTAATAATTTGCACACATTTATAGGCCCTATGATAGAACTCTGATGCACTCTGATCAGCCTagacatgtttggtgtttgtAGTTTTTAGTTTGCTATGAGAATAACAGATCTAATAAGTAATCGAATTTAAAATTACACAAATCACATGGCTAAATCATCTCAACACACCACTCTTCTCAACTAGACTCCACAATGTGGCCTTTGACACCTAATGACATACTATTATGtctaaaatcatgtttaaaattgcTCCATATGACTGCGCAGATTTCTCACAGCTGGAGCCTGACATGCTTACAGTATTCACACTCTACTGATTTCTGGTTAGAGTATTGATCTATGTTTTGAAGTTAATTTGGTTACAGATGCAGTTTATGACCCTGAGTCTTCCCCATTTCcgtttcttcttctccttttgtATCTTACTTTGAATTTTTGTTCacttctgctgtaaataaaccatCTCTCACTGTGTTCCACCTTC

Function

GO:

id name namespace
GO:0048739 cardiac muscle fiber development biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0006397 mRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14946 RBFOX, FOX; RNA binding protein fox-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125223 lncRNA upstream 2163 24914689 ~ 24917690 (+) False G93135
TU125222 lncRNA upstream 7582 24911417 ~ 24912271 (+) True G93134
TU125213 lncRNA upstream 30502 24887446 ~ 24889351 (+) True G93126
TU125199 lncRNA upstream 76803 24842847 ~ 24843050 (+) True G93117
TU125196 lncRNA upstream 80105 24839218 ~ 24839748 (+) True G93114
TU125236 lncRNA downstream 4037 24941218 ~ 24941609 (+) True G93138
TU125247 lncRNA downstream 109815 25046996 ~ 25055662 (+) True G93146
TU125257 lncRNA downstream 194850 25132031 ~ 25133286 (+) True G93151
TU125305 lncRNA downstream 269389 25206570 ~ 25206858 (+) True G93180
TU125286 lncRNA downstream 323957 25261138 ~ 25277719 (+) False G93172
XM_007256871.3 mRNA upstream 13524 24894783 ~ 24906329 (+) True LOC103046000
XM_007256872.3 mRNA upstream 25304 24889954 ~ 24894549 (+) True LOC103046305
XM_007256868.3 mRNA upstream 41796 24862085 ~ 24878057 (+) True LOC103044674
XM_007256867.3 mRNA upstream 41796 24862087 ~ 24878057 (+) False LOC103044674
XM_022673795.1 mRNA upstream 58345 24848997 ~ 24861508 (+) True LOC103044355
XM_007256875.3 mRNA downstream 119677 25056858 ~ 25067665 (+) False LOC103047218
XM_022673810.1 mRNA downstream 120021 25057202 ~ 25067665 (+) True LOC103047218
XM_022673813.1 mRNA downstream 157158 25094339 ~ 25127462 (+) False LOC103021998
XM_022673811.1 mRNA downstream 157159 25094340 ~ 25127462 (+) False LOC103021998
XM_007256879.3 mRNA downstream 157159 25094340 ~ 25127462 (+) False LOC103021998
TU125154 other upstream 211479 24698133 ~ 24708374 (+) True G93079
TU124348 other upstream 3567850 21269165 ~ 21352003 (+) True G92462
TU124346 other upstream 3567850 21275163 ~ 21352003 (+) False G92462
TU124347 other upstream 3567850 21275163 ~ 21352003 (+) False G92462
TU124179 other upstream 3974347 20941426 ~ 20945506 (+) True G92350
TU125312 other downstream 374696 25311877 ~ 25313707 (+) True G93185
TU126114 other downstream 2011282 26948463 ~ 26948879 (+) True G93753
TU126349 other downstream 2982413 27919594 ~ 27939020 (+) False LOC111193309
TU126350 other downstream 2982413 27919594 ~ 27939020 (+) False LOC111193309
XR_002650484.1 other downstream 4318999 29256180 ~ 29256564 (+) False LOC111193374

Expression Profile