RNA id: TU125199


Basic Information

Item Value
RNA id TU125199
length 204
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G93117
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 24842847 ~ 24843050 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTCGGATTCCGACCTCTAGAGCTGTTTTTTCAtcatctttttcttctccttttttcttctcctatTTTGGATTACTCGTCGCCAGTACCCACACGAAGCTTGGGGCTCCAAGCTTCGGGTTACTGTGCATTTCCCGTCGAAGCTCGACATCAGTGAGGACTCCCACCGTAGTTGTAACCTAGCTTCAGTACCTGTCCGCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125196 lncRNA upstream 3099 24839218 ~ 24839748 (+) True G93114
TU125181 lncRNA upstream 35517 24806914 ~ 24807330 (+) True G93102
TU125164 lncRNA upstream 63030 24779565 ~ 24779817 (+) True G93089
TU125162 lncRNA upstream 73012 24768135 ~ 24769835 (+) True G93087
TU125109 lncRNA upstream 305307 24510155 ~ 24537540 (+) True LOC111193352
TU125213 lncRNA downstream 44396 24887446 ~ 24889351 (+) True G93126
TU125222 lncRNA downstream 68367 24911417 ~ 24912271 (+) True G93134
TU125223 lncRNA downstream 71639 24914689 ~ 24917690 (+) False G93135
TU125236 lncRNA downstream 98168 24941218 ~ 24941609 (+) True G93138
TU125247 lncRNA downstream 203946 25046996 ~ 25055662 (+) True G93146
XM_007256866.3 mRNA upstream 5212 24831546 ~ 24837635 (+) True LOC103043665
XM_022673794.1 mRNA upstream 5212 24831962 ~ 24837635 (+) False LOC103043665
XM_007257269.3 mRNA upstream 401708 24438000 ~ 24441139 (+) True tpbg
XM_007257266.3 mRNA upstream 532294 24250254 ~ 24310553 (+) True bckdhb
XM_007257265.3 mRNA upstream 594446 24237124 ~ 24248401 (+) True ttk
XM_022673795.1 mRNA downstream 5947 24848997 ~ 24861508 (+) True LOC103044355
XM_007256868.3 mRNA downstream 19035 24862085 ~ 24878057 (+) True LOC103044674
XM_007256867.3 mRNA downstream 19037 24862087 ~ 24878057 (+) False LOC103044674
XM_007256872.3 mRNA downstream 46904 24889954 ~ 24894549 (+) True LOC103046305
XM_007256871.3 mRNA downstream 51733 24894783 ~ 24906329 (+) True LOC103046000
TU125154 other upstream 134473 24698133 ~ 24708374 (+) True G93079
TU124348 other upstream 3490844 21269165 ~ 21352003 (+) True G92462
TU124346 other upstream 3490844 21275163 ~ 21352003 (+) False G92462
TU124347 other upstream 3490844 21275163 ~ 21352003 (+) False G92462
TU124179 other upstream 3897341 20941426 ~ 20945506 (+) True G92350
TU125228 other downstream 71639 24914689 ~ 24965444 (+) True G93135
TU125312 other downstream 468827 25311877 ~ 25313707 (+) True G93185
TU126114 other downstream 2105413 26948463 ~ 26948879 (+) True G93753
TU126349 other downstream 3076544 27919594 ~ 27939020 (+) False LOC111193309
TU126350 other downstream 3076544 27919594 ~ 27939020 (+) False LOC111193309

Expression Profile