RNA id: XM_007256871.3


Basic Information

Item Value
RNA id XM_007256871.3
length 3298
RNA type mRNA
GC content 0.45
exon number 19
gene id LOC103046000
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 24894783 ~ 24906329 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACATAATGCAAACCTGCACACAAAGTGTGCCATAATTTCTTTATTTCCCCACCACAGAAGTCTCCTGACCCCTCtattcctctcttcctctctcccgcTGCCTTGCCCTCTTCTCTCTCAGTTAGCCTCGTCAATAATTGATGCCTCTTGCTGGCTGAAAGGGTAACAGGTCTACAGGAGGAGTCTATTGCCCATTCACTTCTGCCTCTCTCCCTCAGGGCAGCGCTTTCCATCGactgatacacacacttacattcaGTCTGTTTTACTGTGGGAATATGTATCAACTTGCACATTCGAAATCCTCATCTTTACCTggatatgtgtgtttgtgtttgtgtgttcgaTAATGTATGTGTTGATGGCAAACCATGGGCACACAAGAGTTACTGCTGTCAGTCAACAGACAGCAGGATAGAAGGAAGGATGTAGAGAGAGATTAAATGAGAGAGAGGTAGGgggcacagagagagagtgagagagagagagagagagagagagagagagagagagagagagagacgcagagGCTTTTTAATTTATCTGAAGCTTTGACGTGCTCCATGGCTGGTTACTATATTTCTGAAGCTTTCGGTCACTGAGGAGACGATGGAAAAGAGGAATGAGAAGTTGTTCTCAAGAAAAAGAAGTTTCACATTTGGAGCCTATGGAGGGATTGACAAATTTATCAGTGGCAATGAGAGCAGtCGGTCAGATTCTATAGGACACACCATTCTGGACATCCTGGACTCTCCATCCAATGAGACCAAACCTTTTGTACCCACTAACTCCAACCAGAAGGTGACGGAGCTGTTTGAGATTATTGAAAAGCTACAGGGCAGCAGATTAGATGAGCAGCGCTGCGAGTTTCCTCCACCTTTCAAGTCCCGGCTACTGAAAATCGGAGACGGCCTACCCCTTATCCTTTCTCCTAAATCTGGAGGTTACTGGATCGACCCCCCGCTGGACAAACGTGTGGAGACAAGCCCCACATCCTCACAGGCTGCGTTCGGCCTGGAAAGCTATGACATCatggagagagacagcgagGCCAAGATGTACCAGGAGTTCTTCAGGCACAGGTTCCATCAAAACTTCACTGCTGTGGACCCGTCACTAGGACCGCTGGTTCTGTCCATCTGTTTGGAGGACGAGGAGAACAAACTGAGAGTGATCCTGAGGTTGAACGAGTGCTCTCTGCATGGGACGttttccatttctctttttccacAACTCCCCACGGCGGTGGAGCTCGCAAAGATGCTGTGTTCCAATGTGAGTGTGTCCACTTTTGAGGTGGTCAGCTACCTAAAGGCTCCAGAGCTCATAACGACATTTGATGAGCACAGGATGTCTCAGAACTTTAAGTTTGGGGTCTTATATCAGAAAGAAGGGCAGTTGACAGAGGAGGACATTCTCAGTAACAATGAAGAGAGTGAGGAGTTTAAGGACTTCCTCTCCATACTGGGACAAACAGTCAAACTGCGAGGATTCTTGGGGTTCAGAGGTGGACTAGATGTGTCTCACGGCCAGACAGGAAGTGAGGCAGTGTTCACATCCTTCCATGGGAGAGAGATCATGTTCCATGTTGCCACTAAACTGCCCTTTACAGATGGAGATGCTCAACAGCTTCAGAGGAAAAGGCACATTGGGAACGATATTGTCGCTGTGGTTTATCAGGAGGGTCACACCCCTTTCATCTGTGATGTCATCAGCTCCCACTTCCTGCACTGCttcattgctgtgaggagggTGAAGCGGGAGAATGGGGCtgatggtggagatggagggGCATTTCAGGTGTCTATCACTGCTAGAGAGGATGTTCCACCTTTTGGACCACCCCTCCCTAGTCCTCCCATTTTTTCAGAGGGCTCTGTGTTCCGGGAGTTTCTCTTGACAAAACTCATCAATGCTGAGATTTCCTGTTACAAGGCTGAACGTTTTAGTAGACTAGAGTTGCGGACACGTTCCTCACTTTTGGAGGCGCTGCGCTCAGAACTGTCCTCCCGCTCCCAGTGCATGGTGGGAGAACCTGTGCAGACTGGTGCCCCTCTCAGTGAGGGGACAAGGGGAGCTACAGAAGGTGGAGGAGGTTTCATTGAGAACTTCAAGAGAGCTATCAGAGTGCGCAGTCACTCTTTTGACACGCTGGGAGGTACAAAGAAGGCAGGAGGGGCAGGAACACCAAAGCAAAGGGATGGAGAAAGTGAGTCAGGCCAGAAGATGCCCATTCCGGTGAGCGACAGCCTGGCCTCTACAGATGTCAGAGGTCACACAAGCCCCCAGGAAGACATGTAGCACACTGCCTGGTGACACCAATCGTAAAGATTATCCTTGTCTGACAAGAGACAAGACATGGATATTTCAGTATTGAGGAAATCAGAATAAGATACACCCCAGCTTCACTACAAAGACCAGTCAAAAGATAGAGACCCCATTGCcttggatttgtatctgtctCAGTcggtacaaaaaaatataatagtataattatctcaatatttttgtcCCTGAACATGTAAAATATGATGTGCACaaattatatagatattttttataGATAACTAGTAAATTACACACCTTAGACAAGTATTCATAAAAGAATGGGATTCTTTGGAGCAGCCGCACACGGTcagataaaagaataaaaagcccCCCACCTAATTCAACATTCATGAATTTAGAAGCATAATGTTATTACTAGAGAACATCCTCTGTTTTACTTTACTGTCCATGATTAAACATGTAAACTCATGAGCAGAGAAAAAGAGTAGAAGCCAAACCCGATCCTGTActgagctacagtggaaacatATTTAGACACGAAAATGCAGGTGAATTCTGTTGTACTACTAAACTAACACACAGAAGTAGCTCAGattatttatgtaaaattatttaattaaacaacTACACAAATTCAACTTCACATCGTAAAGGCCAAAGCTTCAAATAATAGAACAGGTTggcttaattacagtaatggaGTTTATAGAACTTTTTATCATTACCCTAAATGTATTGGATTCGCCAAGAAATGTGTTTGAAGTTTGTAGTGGAGTTATGAGGTAGCTAGATTTTCTGGTAGAGAACAGAATGCATGGTTCGGTCAATGATACGTTCCTCAGGACCCTGAAGCAACATAGCAACCCACACCATCACATGTCTCTGTATTTAACTTTTGGTATGCTGTTCTGTCCgaatttttgtgtaaaaaacgTTTTGCCCTTTGACGTAAGAAGACACACATCATGCAGAAAGTGCTGCTTTTGACTAAATAGACCAAAGAAGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125213 lncRNA upstream 5432 24887446 ~ 24889351 (+) True G93126
TU125199 lncRNA upstream 51733 24842847 ~ 24843050 (+) True G93117
TU125196 lncRNA upstream 55035 24839218 ~ 24839748 (+) True G93114
TU125181 lncRNA upstream 87453 24806914 ~ 24807330 (+) True G93102
TU125164 lncRNA upstream 114966 24779565 ~ 24779817 (+) True G93089
TU125222 lncRNA downstream 5088 24911417 ~ 24912271 (+) True G93134
TU125223 lncRNA downstream 8360 24914689 ~ 24917690 (+) False G93135
TU125236 lncRNA downstream 34889 24941218 ~ 24941609 (+) True G93138
TU125247 lncRNA downstream 140667 25046996 ~ 25055662 (+) True G93146
TU125257 lncRNA downstream 225702 25132031 ~ 25133286 (+) True G93151
XM_007256872.3 mRNA upstream 234 24889954 ~ 24894549 (+) True LOC103046305
XM_007256868.3 mRNA upstream 16726 24862085 ~ 24878057 (+) True LOC103044674
XM_007256867.3 mRNA upstream 16726 24862087 ~ 24878057 (+) False LOC103044674
XM_022673795.1 mRNA upstream 33275 24848997 ~ 24861508 (+) True LOC103044355
XM_007256866.3 mRNA upstream 57148 24831546 ~ 24837635 (+) True LOC103043665
XM_007256869.3 mRNA downstream 13524 24919853 ~ 24937181 (+) True LOC103045177
XM_015607779.2 mRNA downstream 17954 24924283 ~ 24937181 (+) False LOC103045177
XM_007256875.3 mRNA downstream 150529 25056858 ~ 25067665 (+) False LOC103047218
XM_022673810.1 mRNA downstream 150873 25057202 ~ 25067665 (+) True LOC103047218
XM_022673813.1 mRNA downstream 188010 25094339 ~ 25127462 (+) False LOC103021998
TU125154 other upstream 186409 24698133 ~ 24708374 (+) True G93079
TU124348 other upstream 3542780 21269165 ~ 21352003 (+) True G92462
TU124346 other upstream 3542780 21275163 ~ 21352003 (+) False G92462
TU124347 other upstream 3542780 21275163 ~ 21352003 (+) False G92462
TU124179 other upstream 3949277 20941426 ~ 20945506 (+) True G92350
TU125228 other downstream 8360 24914689 ~ 24965444 (+) True G93135
TU125312 other downstream 405548 25311877 ~ 25313707 (+) True G93185
TU126114 other downstream 2042134 26948463 ~ 26948879 (+) True G93753
TU126349 other downstream 3013265 27919594 ~ 27939020 (+) False LOC111193309
TU126350 other downstream 3013265 27919594 ~ 27939020 (+) False LOC111193309

Expression Profile