RNA id: TU125092


Basic Information

Item Value
RNA id TU125092
length 346
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G93034
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 24482967 ~ 24483312 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTGGTTTAATGTTTGAAAGAACAATAATGACCTGTCATTATTTCCTCACAGTTAAAGAGTCTGTTACAGCTCTTATCTGACTGAAGCTATTATACACACTTATAAGGATAAAGAAAGGTGATACAGAAAGGGTTTATTAGGTGATGCCATAATAAACTGCTACTTTTTCAAAATGATAACAACCCCAAACACAATTTTAGAAGGACATGAAACTATACTGAAATGCAAACTGTGTACATACTACTCTAAGTTACATCCAAGGGTCATTTCTAGAATGTTGTTCCATAAAAagatataatgaaatatttacagaCGTATTTTTGCTGGATAGTGAGGAGTTTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650468.1 lncRNA upstream 35616 24432897 ~ 24447351 (+) True LOC111193351
TU125016 lncRNA upstream 72037 24374667 ~ 24410930 (+) True G92977
TU125010 lncRNA upstream 160093 24322660 ~ 24322874 (+) True G92973
TU124975 lncRNA upstream 274996 24207689 ~ 24207971 (+) True G92952
TU124940 lncRNA upstream 313891 24168663 ~ 24169076 (+) True G92929
TU125104 lncRNA downstream 26843 24510155 ~ 24527844 (+) False LOC111193352
TU125109 lncRNA downstream 26843 24510155 ~ 24537540 (+) True LOC111193352
XR_002650469.1 lncRNA downstream 48412 24531724 ~ 24537258 (+) False LOC111193352
TU125162 lncRNA downstream 284823 24768135 ~ 24769835 (+) True G93087
TU125164 lncRNA downstream 296253 24779565 ~ 24779817 (+) True G93089
XM_007257269.3 mRNA upstream 41828 24438000 ~ 24441139 (+) True tpbg
XM_007257266.3 mRNA upstream 172414 24250254 ~ 24310553 (+) True bckdhb
XM_007257265.3 mRNA upstream 234566 24237124 ~ 24248401 (+) True ttk
XM_015607873.2 mRNA upstream 248818 24229854 ~ 24234149 (+) False dctn3
XM_007257263.3 mRNA upstream 248818 24229863 ~ 24234149 (+) True dctn3
XM_007256866.3 mRNA downstream 348234 24831546 ~ 24837635 (+) True LOC103043665
XM_022673794.1 mRNA downstream 348650 24831962 ~ 24837635 (+) False LOC103043665
XM_022673795.1 mRNA downstream 365685 24848997 ~ 24861508 (+) True LOC103044355
XM_007256868.3 mRNA downstream 378773 24862085 ~ 24878057 (+) True LOC103044674
XM_007256867.3 mRNA downstream 378775 24862087 ~ 24878057 (+) False LOC103044674
TU124348 other upstream 3130964 21269165 ~ 21352003 (+) True G92462
TU124346 other upstream 3130964 21275163 ~ 21352003 (+) False G92462
TU124347 other upstream 3130964 21275163 ~ 21352003 (+) False G92462
TU124179 other upstream 3537461 20941426 ~ 20945506 (+) True G92350
TU124129 other upstream 3661577 20819150 ~ 20821390 (+) False LOC103032252
TU125154 other downstream 214821 24698133 ~ 24708374 (+) True G93079
TU125228 other downstream 431377 24914689 ~ 24965444 (+) True G93135
TU125312 other downstream 828565 25311877 ~ 25313707 (+) True G93185
TU126114 other downstream 2465151 26948463 ~ 26948879 (+) True G93753
TU126349 other downstream 3436282 27919594 ~ 27939020 (+) False LOC111193309

Expression Profile