RNA id: TU124592


Basic Information

Item Value
RNA id TU124592
length 356
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G92645
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 22067641 ~ 22067996 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATACATTTCTTCCTTCTTCCACAGTAGTGCTGCCTCTGCTGAGTGCCGTGCTGATAGtcgtgatggtgatggtgaagcTGCTGCCGGTGGTCGCTCGggtctgtctgtatgtttgtAGAACGTCTGTATCTTCTGCTGTTACTCTGCAGTTCAGCAGCCTCCTCGTCTTTTCTGCTGGGTTCCTGAAGCTCTTTAGAATCTGTGGTTCTTTCTCTGgctgtgtgtgtcagtgtgtgtctcTTGTAGAGGATGTGAGGTTGGTGGTGTGCTGGTGCTGTGTAGTTCTCCGTTTGCAGGTGATGTTGAAGCAGCGGCCTCAGAAAGTAATCAGCCTCTTGTGTCCGGATCAAGCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124556 lncRNA upstream 49023 21950295 ~ 22018618 (+) True G92615
TU124557 lncRNA upstream 53647 21950295 ~ 22013994 (+) False G92615
TU124581 lncRNA upstream 60489 22005630 ~ 22007152 (+) True G92634
TU124554 lncRNA upstream 116611 21893260 ~ 21951030 (+) False G92615
TU124553 lncRNA upstream 116611 21928449 ~ 21951030 (+) False G92615
TU124594 lncRNA downstream 17214 22085210 ~ 22085542 (+) True G92647
TU124595 lncRNA downstream 23582 22091578 ~ 22091887 (+) True G92648
TU124627 lncRNA downstream 39017 22107013 ~ 22107343 (+) True G92669
TU124641 lncRNA downstream 185023 22253019 ~ 22253231 (+) True G92683
XR_002650414.1 lncRNA downstream 194531 22262527 ~ 22263736 (+) True LOC111193296
XM_007254513.3 mRNA upstream 292018 21770369 ~ 21775623 (+) True tfpt
XM_007254516.3 mRNA upstream 300281 21747323 ~ 21767360 (+) True LOC103046806
XM_022673757.1 mRNA upstream 347470 21703591 ~ 21720171 (+) True LOC103045162
XM_022673755.1 mRNA upstream 369491 21686025 ~ 21698150 (+) True LOC103043132
XM_022673765.1 mRNA downstream 587837 22655833 ~ 22662537 (+) False irx2
XM_007254530.3 mRNA downstream 587838 22655834 ~ 22662537 (+) True irx2
XM_007254531.3 mRNA downstream 801106 22869102 ~ 22874060 (+) True LOC103025323
XM_007254532.3 mRNA downstream 909916 22977912 ~ 23023100 (+) True LOC103025629
XM_007254533.3 mRNA downstream 972942 23040938 ~ 23066260 (+) False slc6a3
TU124348 other upstream 715638 21269165 ~ 21352003 (+) True G92462
TU124346 other upstream 715638 21275163 ~ 21352003 (+) False G92462
TU124347 other upstream 715638 21275163 ~ 21352003 (+) False G92462
TU124179 other upstream 1122135 20941426 ~ 20945506 (+) True G92350
TU124129 other upstream 1246251 20819150 ~ 20821390 (+) False LOC103032252
TU125154 other downstream 2630137 24698133 ~ 24708374 (+) True G93079
TU125228 other downstream 2846693 24914689 ~ 24965444 (+) True G93135
TU125312 other downstream 3243881 25311877 ~ 25313707 (+) True G93185
TU126114 other downstream 4880467 26948463 ~ 26948879 (+) True G93753
TU126349 other downstream 5851598 27919594 ~ 27939020 (+) False LOC111193309

Expression Profile